Lcra039380.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387435.1:28427336-28431929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0051 1.2 11.3 1.3 1 21 99 119 99 120 0.95 2 20 0.075 18 7.6 8.2 1 23 149 172 149 172 0.92 3 20 2.1 5e+02 3.0 0.0 6 20 183 197 183 199 0.94 4 20 0.017 4 9.6 0.3 1 22 205 226 205 228 0.90 5 20 6.8e-05 0.016 17.2 0.8 2 23 303 324 303 324 0.97 6 20 0.11 26 7.1 0.1 1 14 367 379 367 389 0.74 7 20 0.0024 0.57 12.3 0.3 3 23 394 414 393 414 0.97 8 20 0.00041 0.097 14.7 0.1 2 21 444 463 443 467 0.90 9 20 0.0012 0.28 13.3 0.2 1 23 489 512 489 512 0.97 10 20 0.0012 0.29 13.2 1.9 2 23 526 547 525 547 0.97 11 20 0.0016 0.37 12.9 8.3 1 21 576 596 576 598 0.94 12 20 0.00044 0.1 14.6 0.6 2 23 614 636 614 636 0.93 13 20 0.00048 0.11 14.5 0.8 1 23 653 675 653 675 0.97 14 20 8.6e-05 0.02 16.8 1.1 2 23 687 709 686 709 0.95 15 20 3.3e-05 0.0077 18.2 0.1 1 23 724 746 724 746 0.95 16 20 1 2.4e+02 4.0 0.0 1 23 793 816 793 816 0.94 17 20 0.00015 0.036 16.1 1.4 2 23 827 848 827 848 0.97 18 20 1.8e-05 0.0041 19.0 0.9 1 23 882 905 882 905 0.97 19 20 3.4e-06 0.00081 21.2 1.1 1 23 913 935 913 935 0.99 20 20 0.00046 0.11 14.5 0.1 1 23 950 973 950 973 0.97
Sequence Information
- Coding Sequence
- ATGATTTCAAAATTTTTTTTGTTTGTAGGTCTGACTAATGGCGACGGCCTACATGGTTCCCCAGTTCAAACAGAACAACAAAAAATCTTAAATACAATGAGCTTCAAAATATTGAAAACAATTCCTATTGAAACTCCAGAAAATTTAACAAAAATAGAAAACAGTTACGCTGAAAAATGCAAAGCGATGGTCAGTATGCATAAATCGTTAATTTGCGCATGTCATAATGTTCCCCATCAGAATTTGAAAGGATTATTATCCCATTTACGGGCTTTGAGGATTTGGTTTCCAGTTTTTACTTGTTATAACTGTATGATAACGTTTACGGACAGATCAACGTTCACCAGACACATTTCAAGATGTCAGAGCGCACCGTTGGACACCATAACGAAACTGAGCGAGCTCAAAATACGCACCGAAGTAAAAACTAGACTGTACCAAAACTTTAAATGCACTATATGCAAATTTATGTTTAGTTTTCACGAACATTTTTGCAAACACGTCGACGAAGACCACGCTATGCTGCAATTTCCAGTGCATTGTCCTTGCGGTAAGACTTGTGAAACTGAAGAAGAATATAAGGATCATGTATATGTCAGTTGTCTAGTAGAATTTTACTGTGACATATGCTTCGTAACTACGAAAACTCTGGATGATTTCCAGAAACATGCCGCAGGAGTTCATGATGATTCCGAAGGATTTATACTTCTTCAGGATGATAACTATAAAGTTAGAAAGCCCTCTATGCATATTAGTCCCACGGGAGTAGATGAAGGAGCAATCATTCAAGGTAAACGAGAGAGAAAAGCATCGTTTAAAACGCCCCTTTACGATGAAGAATTAGACGAGATATTACCAACAAGTCTTGCAGCTGCTACCTACTATACCCCCAAAACTACTAATAGAGTCTGTCCTATTTGCTACAAAGAATATTCATCTTACAAAAATATGATGCGGCATTACAAAACTCACAAACCCGAAGAAATTCTAAATCATCAAGAACAACAACAGTTAGAACAAGGCTTTGGAGATTTTCAAGACTTCCAAGACCAATCACAAGAATCTCAAGACATGGATTTGGAAGATGAAGAGTCTTTCTATTCGTGTCCAGATTGTGGAGGAATGTTTAGCACTATAGAATGGAAGATACATTTGACGGAGAAACATCAGTCAAAAGCTTGTGGGGAATGTGGGAAATTTTTCCAATTCCAGACGGAACTTGATCAACATAGGAGTGTTCATTTGAATCTTAAGGTATACAGAGACTCTAAAACCCAGTCTTATAAAAGTACGATGATAAGTCCTGGTGGAGAAGATGATGAAATGTTGAGCTGCGAAATGTGCGACTTGATATTTACTTCCAAAGAAGATCTAATGACTCATCAGTTAGAACAAGGACACGCTGGAACTAGCAGCATGGAAGTCCCGGAAATCAAACCCGAAATCACTACCATTCCGAAAAAATATATATGCGACATTTGCGAACAAGAATTCAATAATTATAACGGTTTATGGGAGCATAACAGAACTAGACATCCAGAAAGGAAAACACCTCATGCTGATACCTACCCTAAACAGTGTAAGGATTGCGACAAAGTTTGTACAACCGGGGCAGCTTATTACAGACATAGACAGATACACGAAAAAGTACCGACTGATGCTGGCGCTAGCAGAGCATCTTTACTTAAACCAAAGAAATCCGGTGAACCGGATGAAGAATCTTATCACACTTGTAAACGTTGCTTCAAAGTGTTTTCTAGTAAATATAACCTTAAGAACCACTTAAAATGTCATGGAATTAATATAAATCCAGTGAGTAAAAAACTGGTGAGAAAAGCAGTCTGCAAAGTGTGTCAGCACGTGTTTGATACAAACGAGGAACTTATCAGACATAAACAAGAAGCTCATAACGGTGTTGAAACTCCTATAGACGATATGGACATGGCTTCTTTAGTTTTTCCTTGTGATACTTGTGTTATGACATTCAACAGTAAAGTTGCTTTGAAGAAACACAAAGAAAAGCATAGTTTGGAATATAAATCACTTCACAGACAAGTGTATTGTAAATACTGCAAAATTTCATTTGAGAATTTCCAAAGTTTGACCAAACATATGCAATTAGAACACGACGAAAAAGTCCAAGTGCCGCCTAAAGCCAAACCGAACGATTTCACTTGTTCGATCTGTCAAAAATCATTCCAATCCGCCGGTGCTCTTACAACACACATCGGCTGGCATAAGCGAGCCCTAAACGACAGTAGTTCAAAATTATTAAAACATATTCCTCCTCCACCTCCACCCCCAGCACCAGCAGTACAATTACCTCGATTGCATCAAGTAAATATTAAAGAAGAACCTATGGACGACGTTTCCAAGTACCAATGCGATACTTGTTTGGCCGAATTACCAAATGACACTGCTCTGCAAGTTCATATTTTGGAGAAGCACAGAAGCGTCAGCGCTATTATGTTGATTCCGCGCTGTAACACTTGCAATAAAGATTTCGCCACGCAAGACGAGTACGAGACACATAAAAGATTGCATGATTTCTTGGAACGTCAAAAACAGCACGAACAAAAAATGCTGGTGCAACAACAAGAAATTCCATCGCCACGAATGTCGCAGACTAGCAAACAAAAGAGTTTTCCTTGCAAACATTGCAATGCAGCTTTCAGCAGGTCTGACACGCTAGGAGCTCACATCAGACAGTTCCACAAGGAGCACGTTCAGACGGAATTCAAATGTAACCAGTGCGACAGGGTATTCGAAAAACAAAACTCTCTTACAATTCATTTGAAAGTTCATGAGAAACAGAGAGCTGCTACAGCTCCTGCTGGAAAACCGCTGTTTTCTTGTTCTATTTGCAACATGGGATTCGATTTACCAAAGGATTTGCGAGCTCATACCATAACAGCTCATCCATTTTGA
- Protein Sequence
- MISKFFLFVGLTNGDGLHGSPVQTEQQKILNTMSFKILKTIPIETPENLTKIENSYAEKCKAMVSMHKSLICACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCQSAPLDTITKLSELKIRTEVKTRLYQNFKCTICKFMFSFHEHFCKHVDEDHAMLQFPVHCPCGKTCETEEEYKDHVYVSCLVEFYCDICFVTTKTLDDFQKHAAGVHDDSEGFILLQDDNYKVRKPSMHISPTGVDEGAIIQGKRERKASFKTPLYDEELDEILPTSLAAATYYTPKTTNRVCPICYKEYSSYKNMMRHYKTHKPEEILNHQEQQQLEQGFGDFQDFQDQSQESQDMDLEDEESFYSCPDCGGMFSTIEWKIHLTEKHQSKACGECGKFFQFQTELDQHRSVHLNLKVYRDSKTQSYKSTMISPGGEDDEMLSCEMCDLIFTSKEDLMTHQLEQGHAGTSSMEVPEIKPEITTIPKKYICDICEQEFNNYNGLWEHNRTRHPERKTPHADTYPKQCKDCDKVCTTGAAYYRHRQIHEKVPTDAGASRASLLKPKKSGEPDEESYHTCKRCFKVFSSKYNLKNHLKCHGININPVSKKLVRKAVCKVCQHVFDTNEELIRHKQEAHNGVETPIDDMDMASLVFPCDTCVMTFNSKVALKKHKEKHSLEYKSLHRQVYCKYCKISFENFQSLTKHMQLEHDEKVQVPPKAKPNDFTCSICQKSFQSAGALTTHIGWHKRALNDSSSKLLKHIPPPPPPPAPAVQLPRLHQVNIKEEPMDDVSKYQCDTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFATQDEYETHKRLHDFLERQKQHEQKMLVQQQEIPSPRMSQTSKQKSFPCKHCNAAFSRSDTLGAHIRQFHKEHVQTEFKCNQCDRVFEKQNSLTIHLKVHEKQRAATAPAGKPLFSCSICNMGFDLPKDLRAHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -