Basic Information

Insect: Lochmaea crataegi
Gene Symbol: SCRT1
Assembly: GCA_947563755.1
Location: OX387422.1:120031634-120033041[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0001 0.089 14.4 0.4 12 38 282 305 275 310 0.88

2 5 0.12 1e+02 4.6 0.6 17 28 318 329 307 345 0.75

3 5 0.031 27 6.4 0.2 18 28 345 355 334 367 0.82

4 5 0.00098 0.85 11.2 0.4 19 41 374 393 362 396 0.88

5 5 0.073 63 5.2 5.1 14 43 397 423 393 424 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0001	0.089	14.4	0.4	12	38	282	305	275	310	0.88
2	5	0.12	1e+02	4.6	0.6	17	28	318	329	307	345	0.75
3	5	0.031	27	6.4	0.2	18	28	345	355	334	367	0.82
4	5	0.00098	0.85	11.2	0.4	19	41	374	393	362	396	0.88
5	5	0.073	63	5.2	5.1	14	43	397	423	393	424	0.84

Sequence Information

Coding Sequence: ATGAAAATTTATATTGTTCCAGGTTCATCTCAAGAGCTCATCCCGATCGGTACTACTTTAGAAAAAAGAGTTAACGCAAACCCCAATGAAACAACGACTCAATCACCTTCTAAGCGCAGCGCAGAAGAAACCGAAGCTGCTCACGATCTTCTCTCCCTGTCCCAAAGTCTCCCACCTCTACCAGCACCTAGCGTCGTGATGATCCACCATACAGTATCAACGGAAAACGATCCACCAAGTCCGACACATAATTATCGATCTTCATCTCCACACATGCGTCAAGTAAAGCCAGAACCAACAGAAAAAAGACACGTATCTGTGATTCAGCATGCTCCAGTTTCACAATCCACACAACCTGTGATAATACCCCAACAAGTTCAACAAGTAGTATTACCATGCTACACTGCTTCGCCTATAGTATACGTGGTTCAAGTACCGGCGACCGTACCGACGCCTCCAACTTCAGAATGTTCTTCTGACGTGGAAAATTTGCAGTTATGTACGGTGGAAAGGCTGCACCAAGATGTTACTGTGGTACAAGAACAATCCGATGATATTATAATACTTCCACTTTCACCGGAACCTGATAATTTCGATCAGCATAGAGTGAGAACGACAGTAACTACATCCCATCTCAACATACCCGATAGAAGAAAAAAGAAAAATAAGAGATTCAATAAAAATAAAGAAGATGAGACCAATTCTATCGACAGTCCTGTTAACGAATATGTTTTTGAAGCTCCCACAACTGAAATTACTACTACGACTGTTAAAACGAAATTCTACAAAGTTGTCGACGAAGACGAAGATCAAGAAATAGACGTTGAAACTACAACTGACGATCTACAAAAAAACCGATACGTTTGCGTGGTTTGTGGTAAACAGTACGCAACCTCGAGCAATCTTTCCAGACACAAACAAACACATCGCAGTCTCGATTCTCAGTCGGCTAAGAAGTGTATGACGTGTGGTAAAGCTTACGTCAGCATGCCCGCCTTAGCCATGCACCTCCTCACGCATAAACTAGCACATAGCTGCGATATATGTGGTAAGCAATTTTCACGTCCTTGGTTGCTTCAAGGTCATCTTAGGTCTCACACGGGAGAAAAACCGTACGGTTGCGCGCATTGCGGTAAAGCTTTCGCGGATAGATCAAATTTGCGAGCGCATATGCAAACACACTCGAACGACAAGAATTACAGTTGTAACAAATGTCATAAGACGTTTGCGTTGAAATCTTACCTTAACAAACATCTAGAGTCATCTTGTACGATGTGGGATTCGAAAACGCAACGGTTTAAGCGGACTGTGCATGCCGAAACACAAACTTTTGCCATCACCGTCGACTAA
Protein Sequence: MKIYIVPGSSQELIPIGTTLEKRVNANPNETTTQSPSKRSAEETEAAHDLLSLSQSLPPLPAPSVVMIHHTVSTENDPPSPTHNYRSSSPHMRQVKPEPTEKRHVSVIQHAPVSQSTQPVIIPQQVQQVVLPCYTASPIVYVVQVPATVPTPPTSECSSDVENLQLCTVERLHQDVTVVQEQSDDIIILPLSPEPDNFDQHRVRTTVTTSHLNIPDRRKKKNKRFNKNKEDETNSIDSPVNEYVFEAPTTEITTTTVKTKFYKVVDEDEDQEIDVETTTDDLQKNRYVCVVCGKQYATSSNLSRHKQTHRSLDSQSAKKCMTCGKAYVSMPALAMHLLTHKLAHSCDICGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSNDKNYSCNKCHKTFALKSYLNKHLESSCTMWDSKTQRFKRTVHAETQTFAITVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911276;
90% Identity: iTF_00911276;
80% Identity: iTF_00912516;