Lcra038716.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387435.1:13088913-13092925[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-06 0.00029 22.0 0.0 8 38 21 52 19 55 0.86
Sequence Information
- Coding Sequence
- ATGCCTATACAGAACAAACGAAAAAGAGAAAGAACTATCTATGAAAATAATGCAAAAACTGCTCTTCGCGCATTTTTCACAAAAGAATGCTCTATGAGGGAGGCCGCCAGGAGATATGGCATTAAAAGAAACACATTACAATCCCGGATTAAGAAATTGCGCGATAGAAGAACAGATGATGAGCTCAGAAGAAAATTCGAAGATTCTGGAAACGAAAGCGATGAGGATGAACCTCCTATCCTGAGCCGGATGTACACTGCCATAGTGAGACCAATTATCACTTATGGAGCCAATGCGTGGAGTAGTAGAACTAGCCCATTGACAACGAGAGAAAACCTCTCAAAAATTCAAAGACTAGCCTGTATGTGTATTACAGAAGCAATGAGAACATGCCCAACGGCAGCCATGGAAGTTACTCTCAATCTCACACCACTACATATGGTGGTGGAAAGTGTTGCAGAAAGAACAAGACACAGACTAAGTAGAAAGGGAATCATTAAAAAAAACCACCTCCTTACTTCTTTGAAATCAGAAAACCTGGGACATGCCACAAGATGCAACAAGAAGGAATGGGATCCAAATACCATTACCAGACTTGGAAAGAATGCCATTCAATGGTACACAGATGGCTCAAAAGCAATAGAAGGAACTGGGATAGGATGTGCCCAGTTCCATATTGATAAAGGATATAGAAGGCAAAGGATTATCATAATGTCGGATAGTCAAGCAGCAATTAAAGCACTGAGCTCTTGTGTTATCAGTTCCAAAATGGTGTGGGAATGCCTAGGCAAACTAAATGAACTAGGCGAGAACAATATAGTCACCTTACTGTGGATTCCAGGACACACAGGGACAGAAGAACTAGCAAGGAGGGGGACTGGAACACCCTCTTGGGGGCTGGAACCCTTTTGCGGTATCAGCTCCAATGTAATATTGGACGAAATGGACAAAGCCGAAGAAAAGAGAAGATCTGACCATTGGCAAGATCTAGTAGGACTTAGGCAATCAAAGATTCTTCTGGGTGACTACAACCTGTTGAGATCAAATGAATGCATAAGTCAAAGTAAAACTGCACTAAGAGTTTTACCAGGCATCCTTACGGGACATTGTCGCCTGAATGGGCACCTGAGAAAGCTCAAAATAGTGGACGAAGAAGAATGTAGATTCTGTGGTATGGAAGGAGAAACCTCCATCCACATACTTGCAAACTGCACAGCAATTCAGAATCCTAGGGCACAACACGTTGGAGATTACTGGATAGAAGAGGGACATTTACCTAAGTTGAAGCCTGCAGATATCCGAAAATTCCCGGGAAATAGGAGTAAAGGAGCTACTATGAAGCTTTGTCAATTTAATTTAATAAGACTAATGGCAAGTATTTTTTGTAGGCGTCGAGTGGAGAAAAAGATTCATAACGAGACATCAGAACCTGTCATTAAGAAAACCAGAAAGTTCGAGTTTACTACTGGATTTAATAAATCACGAGTAGACAAGTTTTTCAATAATTATAAATCAGTTCAACAGAGATATCACTTCAAAGAAACTCGAATTTACAATCTTGATGGAACTGGTCAATCAACTCTCATTAAGCCCGAAAGAGTTATTTCAACAAAAGGAAAAAAGCAAGTTGGTCAAGTTGCCTCGGGAGAAAGGGGTGAATCAATCACTGTTGTAGGAACAATTTGTGCTGCTGGCACTATATTTATCTATCCAAGGATACGGGATCCGTTCAAATATATGATCAATCCTCCACCTGGAAGTGTAGCTTTGGGAAGCGAAAATGGATGGATAAATTCCGAGTTATTCATAAAATTTTTACAGCATATTGTTCTTCACACCAAGTGCTCTAAAGATGACAAAATACTGTTATTGATTGATAACCACAAATCACATTCTACAATACATAAATCCAAAATATACACCGACACACCCGAACTATTAATGATCAAACAAAGCATGGAGGAAGAAAATAATAAGAAAGTGAAAGCAAACAAGACAGTAAAGACGAAAGTATTTTCATCGGAAGAAAAAATAATACCACATGAATCCTCCAGCGAATCAGGCATTTCGATTGATATGGCAGATTCAGATAGCAGTGAGTCGTTCATGTCACTAAAAGAAATGGATAATAATGAAAGAATCGAAACCAATGATTTTGTACTTGTGAAGCAAAAGAACAATGTCTGTTTCTTTATAGGACAAATTCTTGAGATTAATGAGGAATCTTATCAAGTCAAGTTTTTGAGACGCAAGGGTAATTCCAAAAGCTTCCACTATCCAGGAATTGATGATATAGCGATGGTTGAAGCAAGCGACATCCAAGCTAAGCTTACTAGACCTGAAAAAGCAGGAACTGCAAGAACACAAATTTTCTTTAAAATATGA
- Protein Sequence
- MPIQNKRKRERTIYENNAKTALRAFFTKECSMREAARRYGIKRNTLQSRIKKLRDRRTDDELRRKFEDSGNESDEDEPPILSRMYTAIVRPIITYGANAWSSRTSPLTTRENLSKIQRLACMCITEAMRTCPTAAMEVTLNLTPLHMVVESVAERTRHRLSRKGIIKKNHLLTSLKSENLGHATRCNKKEWDPNTITRLGKNAIQWYTDGSKAIEGTGIGCAQFHIDKGYRRQRIIIMSDSQAAIKALSSCVISSKMVWECLGKLNELGENNIVTLLWIPGHTGTEELARRGTGTPSWGLEPFCGISSNVILDEMDKAEEKRRSDHWQDLVGLRQSKILLGDYNLLRSNECISQSKTALRVLPGILTGHCRLNGHLRKLKIVDEEECRFCGMEGETSIHILANCTAIQNPRAQHVGDYWIEEGHLPKLKPADIRKFPGNRSKGATMKLCQFNLIRLMASIFCRRRVEKKIHNETSEPVIKKTRKFEFTTGFNKSRVDKFFNNYKSVQQRYHFKETRIYNLDGTGQSTLIKPERVISTKGKKQVGQVASGERGESITVVGTICAAGTIFIYPRIRDPFKYMINPPPGSVALGSENGWINSELFIKFLQHIVLHTKCSKDDKILLLIDNHKSHSTIHKSKIYTDTPELLMIKQSMEEENNKKVKANKTVKTKVFSSEEKIIPHESSSESGISIDMADSDSSESFMSLKEMDNNERIETNDFVLVKQKNNVCFFIGQILEINEESYQVKFLRRKGNSKSFHYPGIDDIAMVEASDIQAKLTRPEKAGTARTQIFFKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -