Lcra018208.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387425.1:18963582-18969169[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7 5.9e+02 1.8 0.0 19 35 19 35 18 38 0.90 2 2 2.6e-05 0.0041 18.4 0.0 4 34 455 485 452 496 0.82
Sequence Information
- Coding Sequence
- atgcttaatgtagtaaactattttcaaaacgatttaggatctcgatttaaggcaattcaaaaagcgtccgaagcactaaaagttccagaaagcacattatataatcttgaaaaaccaaacagagctacagatttcgaatttagaagaaatatgtctgcaagcgtttcccggagcaaaacccgaattacaaaaaataccctgcattgtttgagggaagtaatttataaaatgtatgcgcgaaaggataaaatcacagtagaaactattttacggcaatttatcgaagagtctccagaaactaagatttccaaaggttcgttatatttgggaattaaaaaaatgggttttcatttcaaaaaacaggatggaagaaaacatttattggaaatgcctgcagtcagattaaaaagaatattatttttgaacaaataccatgctgctaaaagcgaaaagctctttacacctgtttttctgGATGAGACATGGGTTTTTAGTAAAAGCGGGGACAGAAGAATGTGGCAAGATGGTACTAAACACAGTGATTTAAAAATAACTGGAAGTGGGACACGATATGTAATTGTTCATGCCGGTAATAAAAAAGGTTTTGTGGCAAATGCATCGCTTATTTTTAAATGCAATAAAAAAACAGGCGATTACCATGATAACATGAACACCGAAAATTTTGAAAATTGGTTTAAACAGCAACTAATTGTAAACTTGGAAGAACCATCGTTAATTATAATGGATAACGCAACGTATCACAGTCGCCTGGATGAAGAAATCCCAAGAAAAAGTTGGAGTAAAACACGCATGTTAGAATGGCTCAAAAAAAAGAATATTCCTTTTCCAGATCACATTTTAAAGGATGCTGTTTGGAATATAATTGAAAAGCAAGTTTTGCCAGAAAAAAATTATCACTTAGACAAATACGCTGCCGAGCATGGTCATTGTGTTCTCAGGCTACCACCCTATCATTGCCATTTTAATGCCATCGAAATGGTATGGTCAGAAACTAAAAGGCATTATGACCAAGCTATTACGAAAACTGCAAGGTCACCTACTGAAGTCTTAAAAGTATGGAATGACGTTGTAAAAAATGTACCGGAGCAACACTGGCAGAATTACAAAAATCATACAGAGAAAATTATTTCTGAAGCATGGGAAGTAGAAAACAAACTGGACCTACTAAACATCGAACCTATGGTGATCTCTGTATCCAATGAATCCGATGATGAACTATCACTTTCCGAAACATACCATCTACATACATCATACTTCTCTTTTAAAATCAAACAATTTAAAATGCCAAGAGTTTACATGCGTAAACCGGGTGCAAAGCGGTTTAAGGACTACGATGAAAAAACTTTAGAAAAATGTTTAACTGAAGTTTTAGATGGAAAAATTAGTGCAACCAAGGCTGCGAAAAAATACAAAATTCCTAAAGGGACAATTATTAACAAAATACATGGTCGGCACGTTAAGAAACATGGAGACCAAACTGTGTTTTTGGCTGCTGAAGAAAGTGACTTTTTTCTTTGGCCCAATGAAAAACTATTGGAAAAAATTCTTCATGATTGGAAAAAGTGCAATTCAACAACATCTTCAGTGGAGAAAAGTATCTTTCCACGGTTGTTAAAAAGACTGTTTGATGAAATGGCCGATGTGGCATCAAAAAACGCCCGGAGTGGCTTTTATGCTTGTGGAATTTTTCCTTTGTGCAAAGAAAAACTTCTTGAAAAAATTCCTAAACAAACAGATGTGCGAAATAGTGATGTCGGGGAAGTAATAGTTAATTATTTAAAAGAGCAACGAAATCCAAATAAGCGTGATCATACAACAAAAAGAAAAAAATTAAATGTTGTGTCTGGGCGGTCAGTTGCTTTTGAGGACACCCCGGAGAAAATAGATGATGAAGACAATCATAAACAGCCTACCACCAGTGGGATCCTAAGTGTTAAGCGAAGAATTTGTGATGAAAATCATGAAACAAGCTCCGAGGAAGAAGAAGGAATCGACGAAAGACATCAGTCTATTTTTGAAGAAAACGTAGAAGAATATGTTAATGACCAAAGAATACAAAATGAGTCATGGGTAATAGTAGAATACCAAACAAAAAAAAAACAACAAAACATTTTGTTGGGCAAATTTTGTCAATTAGTAGTGATGGTGATGAAGCTTCAGTTAAATTTGTTAAACGCTCTAAAAACGACATTAATAGGCGAGGAAAAGTGTGGTACCGTAAAACATCCAAAGAAATCCCCAGGAAGGCATAAGATAACTATCGGCGAGGAAGAAAAACATGTTAAAACATTCCACTCTAATAATGAAATTCCGACCTTAGATAAAATTTTATGA
- Protein Sequence
- MLNVVNYFQNDLGSRFKAIQKASEALKVPESTLYNLEKPNRATDFEFRRNMSASVSRSKTRITKNTLHCLREVIYKMYARKDKITVETILRQFIEESPETKISKGSLYLGIKKMGFHFKKQDGRKHLLEMPAVRLKRILFLNKYHAAKSEKLFTPVFLDETWVFSKSGDRRMWQDGTKHSDLKITGSGTRYVIVHAGNKKGFVANASLIFKCNKKTGDYHDNMNTENFENWFKQQLIVNLEEPSLIIMDNATYHSRLDEEIPRKSWSKTRMLEWLKKKNIPFPDHILKDAVWNIIEKQVLPEKNYHLDKYAAEHGHCVLRLPPYHCHFNAIEMVWSETKRHYDQAITKTARSPTEVLKVWNDVVKNVPEQHWQNYKNHTEKIISEAWEVENKLDLLNIEPMVISVSNESDDELSLSETYHLHTSYFSFKIKQFKMPRVYMRKPGAKRFKDYDEKTLEKCLTEVLDGKISATKAAKKYKIPKGTIINKIHGRHVKKHGDQTVFLAAEESDFFLWPNEKLLEKILHDWKKCNSTTSSVEKSIFPRLLKRLFDEMADVASKNARSGFYACGIFPLCKEKLLEKIPKQTDVRNSDVGEVIVNYLKEQRNPNKRDHTTKRKKLNVVSGRSVAFEDTPEKIDDEDNHKQPTTSGILSVKRRICDENHETSSEEEEGIDERHQSIFEENVEEYVNDQRIQNESWVIVEYQTKKKQQNILLGKFCQLVVMVMKLQLNLLNALKTTLIGEEKCGTVKHPKKSPGRHKITIGEEEKHVKTFHSNNEIPTLDKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -