Lcra036432.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea crataegi
Gene Symbol
pol
Assembly
GCA_947563755.1
Location
OX387429.1:30909052-30918015[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.9e-08 1.1e-05 26.6 0.0 1 44 34 77 34 78 0.95

Sequence Information

Coding Sequence
ATGAAATTCATTACTAAAATGTTCTTGAACGGCTACGACATTATGGCTAATAAGAAAATGGGAAAAGTCAAAAGTCTCAAGCCACCGCGACAAGCATGGGATGAAGAAAATATGCGGGAAGCCGTAGAGAATGTACAGCAAAAGAAAATGGGCTGGAAGCTATCTTCCAGAACTTTCAATGTACCCAGCACCACTTTGCGACGAAGAGTTGGTAGAAATATGGGCTACAAGAAAAGAGACCTTGGAGTATGTCCCTATTTCCAAAAAATCGACGATGTTTTCACACTGTATAATTTATCTCAAGAAAATGTGTATAATATGGACGAGACGGGCTTTTCCACAGTCCAATCTAAACCTGAAAAAATATTTGCTACAAAAGGTCGCAAACAAGTCGGCAGTTTGACAAGTGCTGAACGAGGAGGTCATTATATTGAAGTGTGCGCTATCTTTCCTAGGAAAAACATGAAGCAAGAGCTGATGGCTGGTGTCCCCACAGGATCGATTTGCTTTCGTCAAGAGAGTGGATGGATGACATCCGAAGTTATGCTGAAGTGGTTGAACCACTTTATAAGATTGGCTAAACCAAGCCAAGGAAACAAGGTGACACATTTGCAAGTGGGCCAAATTTTCGGTAAAGCCTTCACTTCAGAGAACCCTGAGATAAATTTAGAAAAACCAAGTACTTCGCAACTTTCTGTCAGTGTAGAAGATATTACTGCTTTGCCAAAAGCGCCCGCACCCCAGAAGGCAACAAGAAAACCAAGGAAAAAAGGAAAGTCAGGTGTGATTAATTCAACCCCAGATGCGACTAATAGGTTAGATTCCCAGGAATCTAGAGGAGTAAACCTCGATAAAAAAACCAGCGACATAGGGAAGGCAGCTATGTTGTGGTGTAGTgTTATGGATGAAGAAAGGCAAGGAAATGGAATTTTTGGTAAGTCGACGAAGGTAAAACGAACGCCTGATAAGGCGGGGGAGACGAGAGGGAGGAGTGATACTGGAGTAAAGAGAAAGGAGGTATCGCCTCTGGAGGACAAGGAACAGAAGAGGAAACTGAAGGAGAAAGGAAAGAAGGAAATGGAGGATTGGGAGGAAGAAGAGAAGGAGAGTGTAGAGAGATTGAAGGATATGGTAAGGCGACTGGAGGAGAAGGTGGAAAGGCTGGAGGAAGAGAAGGCAGCGGCAGAGGGCAACGGGATAATGCAAACACGATGGGAGGTGGGGCAAAGAGACTGGGAAGGATGGCTGGAGGTTAGAGATAGGGACTGGGATGGTAAAAAGGGGGAGGGAATAGAGGTGAAGGTGGGAAATCCAATATTAGGGGATGAAAAGGTAAAGGTGGTATGGGTGACCAAGGAAGACAGTGGAATGGAGAAGGGAATACAGAGGATGTTTAGGGATAGGTACCCGATGCTAGGCGGAAAAGGAGAGGAAATGGAGTGGGTCAAGGAGGTACGCACTACGGAAAGGAATGGGGTAAGGGTGAAGACGGAGGAGTTGATCTGTCGGATGGAGGGAGATTGTAGGGATGAGAAAAAGGTGTTTGAGCTGATGAGTCGACTGTTTGGGGTAGTGGGGAACGGGGACAGCATTGGACTCCACAGGCTTGAGCGGGTTGAGGTGGAGGTGCTGAAGAAGATGGTGGCGTGGGTGAGAGGTGGCGGAGAGGTGGCGGAGGTAACAATCTATACAGATGGGGAGAAGGAAAAGGAGGGTAGAAATGGGGCGATAATCCTGAAGGATATCGGGGAAGTCGATCAGGAGGGGATCGAGAGGATTAAGAAGGGGTTGAGGGAGATGACAGGGGAGTGGGTGGATAGACTCAGAGTCTCAATAAATAGGGAGGTGGTAATAGAGGCAAAGAAGGGGGTTGAGGTGAGGGGAATTCTGGGGGAGGTAGGAAGGGTAACAGGAGCTAGGGTGGTCGAAGCGGGGAGGGGAACAAAAACCATTAAAATGGTAGGGATAGAACCGTGGATGGAAGATGAAAAGGTGAGGGGGAAAATAGAGAATTTGATTGGGAAAGGGACAACGGTGATTAAAGTGGAGATTAGATTGGGGTGGAACAGGGTAAATATTATAGAGGGTAGAGAGGATGACAGATGCTTTGGATGTGGGATAAAGGGCCATAAAGTAACAGGGTGTAAGGTGAAGGTAGTCAAGGAGAGGAGTAAGTGTTGGCTTTGTAAGAGCGAGGATCACATGGCGAGAGACTGTCGGCAGGCTTTCCTTTGTAGGGTATGTGGGGAAAGGGGACACAGGCCAGGGGAGATAGAATGTAGTAGGGGAAGGGAAGAAGTAGAAGGAGATGATGGAAAAGGGGACGAGTCTGGTCAAATAGGAGGAAGGGGACAGCATTGCGCGGGAAGGAGGAATGTAGGGGATGTATGGAGAGTGTTACAGATAAATTTAGGGAAATGCAGGATAGCGCATGATATATTGGATGAAGTGATTTTTAGGGGGGAAGTGGATGTAGTGTGTGGATCCGAGGTGAATGCTAGATATGTGGGGAAGCAGGGATGGATTATGGACGATACAGGAGAAGCAGGAATAAGAGTGGTGGGGGATGGATTGAGGGCGGATGAAGTGAGGAAGGGAAATGGATGGGTGGTAGTGCGAATGGGAGACATGGTGGTGTATAGTGTGTATATAAGCCCAAATGTCAGCCTGGAAGAATATGAGAGGAGCATGACAGGATTAGAGGACGATCTGAGGGTGTCAAAAGGAAAAAGGAGGATCATAAGGAGAATGGTGGCAGGGGACTTCAATGCGAAGAATACTATATGGGGGGGGAAGAAAACGGACAGGAGAGGGGAGATCCTTGAGGAAGTGTTAACATCCAACGGGTTGGTGGTGCTGAATGATGGACTACTGCCCACCTTCGTGAGGGGTGACGGGGGTTCATCATTCATTGATATAACAGCATGTGATGAATGGCTGTGGGAAAGAGTGTTTAGTTGGGGGGTGCTGGAGGATGAGGAAAGCTTGAGCTTACATAGGTATGTGGAGACGGATATAAGGAAAGATAGAAAGGATTTAGTGGAAGAGTGGGAATGGAAGTGGACGAAAGCCGAGGCAGAGAGAATGAGGAAGAAAGTAAGAGAAGAGATAGGAAGGGGACTTGGACATGATGCAGATGAATTGTACAATGTGATACAGGGCTGCAAAAGAGAGGGAAAGAGGGGCAATAGGCATGAGCGGAGGGCCAATTACTGGTGGAATGAGGAAATAGAGGAGCTGTGGAGGGAGTGTAAGAAAGAACGAAGACGGATGCTGAGAGGAAGAGGAAGGATAGAGGGAAGAGGGAGATATAAAGAGAAGAAGAAGGAACTGGAGCGTAGAGTGGAGAGGGAAAGAAGAGGGAAGTGGAAAGAGTTACTGGGGGAATTGGAAAACAATCCATGGGGAAAGGCGTATGAGATAGCGGTGAAGAGGATGGGTGGAAATAGAAACGAGGTTCTAGAGGAGGATTGGGAGAAGGAGATCATAGAGAAGTTGTTCAAAGGGGGAGAAGGAGGAGTGGGTGGCAGAATTCAGGAAATCCAAGATACAAGGGGGGTAGTGAAAATGAGGGGGATAAGGCCGGTAGAGAAGTGGGAGGTAGAAGATTGGGGGAGAAATATTAAAGTGAGCAAAGCCCCAGGGATAGATGGCCTGAGGGGTGATATGGTGAAGAGGCTGTTGGATGACAATAGGGAGTACTTCTGGGAACTATTCAACAGGGTGCTGAGGGAGGAGGAGTTCCCGGAAGGATGGAAGGTAGCCAGGGTGATACTGATGAAGAAGGCGGGTAGAGAGGGGAAGCGGGCGGGGGACTATAGGCCTATCAGCCTGCTGGATAGGATTGAGGAGGAAGTTGGTAGGAATGGGGGTTTTAGGGTAAACCAGCATGGGTTCACGAAGGGGAAATCTTGCATCTCGGCACTGAGCAAGGTGATGGGTTTGGTGGAAAGAGCTAGGGAGGGCAGCTGGAGGAAGAAGAAATTGGCCCTACTCGTGTTCTTCGACGTCGGGAACGCGTTCAACAGTGTCAGCAAACGGGCAGTGTTGAGCGCGTTGCTGAGGCTTGGAGTGGAGCAGGGGTTGGTTAACCTGGTGGAGGACTACCTGACGGGGCGTGTGATTGTAGACTCCAGAGGGAGGAGATATGAGATGGAGGCTGGAGTGCCTCAGGGCTCGGTTCTTGGACCGACGCTCTGGAAGTGTGTGTTTGATGAGGTTTGTGGGATAGTATGTGAAGAGGGATGTGAGATTACGGTGTATGCGGATGATGTGTGTCTGGTATGTACGGCAAAGGGAGAGGCGGAGATAGAAAGAAAGGCGGAGAGAATGTGCAGGAAGATTGTGGAGAAGATAGAGCGGTGCGGACTGGAAGTGGCGGAAGAGAAGACGGTGGGGTTGCTAGTGAAGGGACGGAGCAGGGCAAGGGAAGTGGAGGTGATGGTTAAGGGAAGGATAATTCGCATGGAGGAGTCTGTGAAATACCTAGGGGTGTGGTTGGATAGCCAATTATCCTTCAAAACCCATATGGTAAAGGCGGCAGAGAGGGGTAAAGTGAGGGCAGCATGGCTGGGGATATTGATGTGTAATGTGAAAGGGCCGGGAGAGTGGAAGAGGAGGGTAATTGGTAGGATGGTAGAGCAGAGTATGCTGTACGGTGCGGAGGTGTGGGGTGAAAGAGCGGGGGTGAATGCGAGGGTTAGGCCACTTCTGCGGGTGCAGAGAGGGATACTGCTGAGGGTGGTGCAGGGGTACAGGACAGTGGGTGGACTGGCAGCAGCGGTGCTGGCAAGGTCCTACCCATTGGACGTGTTGGCTAGAGCTAGGAGCAAACGCTGGAGGGGTGCGACCAATGAAGAGGTACGGGAATGGATGGAGGAGGAAATGGAGAGAAGGAGATATTGGATGGACCGGAAATTCGGGGAGGTGAACTACTTCTTGACACAATTTGAGGTGGGTTTGGTTGGTAGGCATCTCATTGGGGATGAGTCCAACACTGTTTGGGTCCTGGACCCATTCGAACATGAGTTTCCCATCTCGGCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGTAGAGATAGAAAAGGCTGTAGAAAATGATAAGCAGCAGAAGGTAAGCGAAAAATTGGTAATGGCGGCGAAAAGATATTTGAAAAATATTGAGGAACGAGATCGAAATGAAGATGACAACAACAACAAGTTGCCAATGACGAGAATGTCCCCTGTTTGTACTGCAACAAACTGTATTCTTGGTCTAAGTCTAGACAGATCTGGCTCAAATGTCAATCATGTGGCATGTGGGCACTTGCACTTTGTGTGGGAAAAGATCCAAAGTCCAAAAATTACACTTGTGAACTTTGTGAATAGAAAAATTAATTTCCACAGAGCAGACCGTCCACTAAGAAGCAACAACTACTTCTCGGGCTATATGCCCCGACAGACATTGAATTACACTTCTAAAGTAAACGGGGTTGGTATATCTGTTAATATAGAACCAACCATTCTGCTCTGA
Protein Sequence
MKFITKMFLNGYDIMANKKMGKVKSLKPPRQAWDEENMREAVENVQQKKMGWKLSSRTFNVPSTTLRRRVGRNMGYKKRDLGVCPYFQKIDDVFTLYNLSQENVYNMDETGFSTVQSKPEKIFATKGRKQVGSLTSAERGGHYIEVCAIFPRKNMKQELMAGVPTGSICFRQESGWMTSEVMLKWLNHFIRLAKPSQGNKVTHLQVGQIFGKAFTSENPEINLEKPSTSQLSVSVEDITALPKAPAPQKATRKPRKKGKSGVINSTPDATNRLDSQESRGVNLDKKTSDIGKAAMLWCSVMDEERQGNGIFGKSTKVKRTPDKAGETRGRSDTGVKRKEVSPLEDKEQKRKLKEKGKKEMEDWEEEEKESVERLKDMVRRLEEKVERLEEEKAAAEGNGIMQTRWEVGQRDWEGWLEVRDRDWDGKKGEGIEVKVGNPILGDEKVKVVWVTKEDSGMEKGIQRMFRDRYPMLGGKGEEMEWVKEVRTTERNGVRVKTEELICRMEGDCRDEKKVFELMSRLFGVVGNGDSIGLHRLERVEVEVLKKMVAWVRGGGEVAEVTIYTDGEKEKEGRNGAIILKDIGEVDQEGIERIKKGLREMTGEWVDRLRVSINREVVIEAKKGVEVRGILGEVGRVTGARVVEAGRGTKTIKMVGIEPWMEDEKVRGKIENLIGKGTTVIKVEIRLGWNRVNIIEGREDDRCFGCGIKGHKVTGCKVKVVKERSKCWLCKSEDHMARDCRQAFLCRVCGERGHRPGEIECSRGREEVEGDDGKGDESGQIGGRGQHCAGRRNVGDVWRVLQINLGKCRIAHDILDEVIFRGEVDVVCGSEVNARYVGKQGWIMDDTGEAGIRVVGDGLRADEVRKGNGWVVVRMGDMVVYSVYISPNVSLEEYERSMTGLEDDLRVSKGKRRIIRRMVAGDFNAKNTIWGGKKTDRRGEILEEVLTSNGLVVLNDGLLPTFVRGDGGSSFIDITACDEWLWERVFSWGVLEDEESLSLHRYVETDIRKDRKDLVEEWEWKWTKAEAERMRKKVREEIGRGLGHDADELYNVIQGCKREGKRGNRHERRANYWWNEEIEELWRECKKERRRMLRGRGRIEGRGRYKEKKKELERRVERERRGKWKELLGELENNPWGKAYEIAVKRMGGNRNEVLEEDWEKEIIEKLFKGGEGGVGGRIQEIQDTRGVVKMRGIRPVEKWEVEDWGRNIKVSKAPGIDGLRGDMVKRLLDDNREYFWELFNRVLREEEFPEGWKVARVILMKKAGREGKRAGDYRPISLLDRIEEEVGRNGGFRVNQHGFTKGKSCISALSKVMGLVERAREGSWRKKKLALLVFFDVGNAFNSVSKRAVLSALLRLGVEQGLVNLVEDYLTGRVIVDSRGRRYEMEAGVPQGSVLGPTLWKCVFDEVCGIVCEEGCEITVYADDVCLVCTAKGEAEIERKAERMCRKIVEKIERCGLEVAEEKTVGLLVKGRSRAREVEVMVKGRIIRMEESVKYLGVWLDSQLSFKTHMVKAAERGKVRAAWLGILMCNVKGPGEWKRRVIGRMVEQSMLYGAEVWGERAGVNARVRPLLRVQRGILLRVVQGYRTVGGLAAAVLARSYPLDVLARARSKRWRGATNEEVREWMEEEMERRRYWMDRKFGEVNYFLTQFEVGLVGRHLIGDESNTVWVLDPFEHEFPISARKKKKKKKKKKDVEIEKAVENDKQQKVSEKLVMAAKRYLKNIEERDRNEDDNNNKLPMTRMSPVCTATNCILGLSLDRSGSNVNHVACGHLHFVWEKIQSPKITLVNFVNRKINFHRADRPLRSNNYFSGYMPRQTLNYTSKVNGVGISVNIEPTILL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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