Basic Information

Insect: Lochmaea crataegi
Gene Symbol: -
Assembly: GCA_947563755.1
Location: OX387435.1:17579963-17582533[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.8e-08 7.6e-06 27.1 0.1 2 38 16 52 15 56 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.8e-08	7.6e-06	27.1	0.1	2	38	16	52	15	56	0.90

Sequence Information

Coding Sequence: ATGGTGCGAAATTACAAGAAAAAAAAAGAAGAATCTGCTTATAATGAAGAGGACATACAAGTTGCTATCAGAGCTGTACGTGATCAACAAATGACCCTGCGTGAAGCTGCTGCATATTACGGGATGTCACACACAGCCCTGCGTTATCGCCTGAAGAAATTAAAGTTTAATGATGAAGGTCATGTTCCCTCTTCTGTAAAACATGACTACCAATCGAAATACTCCAGCCGGCAGATTTTTACAAAGGAACAAGAATTATCActggttgagtatgctattaactcatccaaaatgtgctacggtctaacgtaccaacaactgagagtgcttgcatacgattatgctgcaagacttgacttagaaatgcccaatagttggtccacaaatcagatagcgggagaagattggctctacggtttcatgagacgacatcgtaaccttagtattcggaggccggaaaacaccctttcgagattgacatctttcagcaaaacgaatgtaaaagcgttttttgataactacgagagagccctaaagttaaagaactttacagcatgccacatatgcaaccttgatgaaacaggtgtggccactgttatacaggcaccaaatatcttagctccaagaggtgctaaacaagtcgggcaggctgtttctgccgaaaaagggcaatcgattacattgtgtatgattataagtgcatctggtaattccttgccaccagtatttatttatccccgagcaagagtaaatgattccatggttgatgacggtccacccggtagtattgtgttggccaacagcccaggaagccactggatgacgcgtgctctattcttacacgttctgaaacatatagtgaatcatacgaagtgcagttctgaaaatccaattcttatcctcatggataatcacgagagccactgttctcttgacgccgtcaactatgctcgagaaaacggcataactttagtaactttcccgccccattgttcccataagctgcagccgctagatgctggtgtgctgggaccttttaaggcgaagacaaaagttgcacaaaatgactggttgaccaaccatcctggcagaactatttctatccacaatCTTCCCTCCATAGTTACTAGAGCATTTGACTCATCATTCACAAGAGCAAACATTATTTCTTCATTCAAGAAGCCTGGACTTTGGACACTTAATCGTCAGGTATTTACAGACGAAGATTTGTTGAGCTCTGCTGTCACGGATAGACCCATTCCAGACGAGCCAGTCTGCGAGCCCATAGAACAGGCGGCATCGTCTGATACAGATAATTGCTCCATCCCCAGCAAAGATATAAATGTATGTCCAAATTTGTCCACTCCAAGCATCGATCCGAGTTACATACTTGGATGTAGCAAAGATTCAGAAACCATCCAAATCGATCCCGCTCACAATAAATCATTAGTGCTGATTTCACCAGAACATTTTCGCCCATATCCAAAGGCCCCTCCTCGATCCAATTCGCTTAGAGAAAGGAGAAAAGGAAAAAACACACTGGAAGATGAACAGCTGGAGAGAGAGTCCAAAAAAATGAAGCTTACAAAAACAAAACCAGAAAAAATTCGTCAGGTTGAGAAAAACATCTGTAAATCGCTGGAAGTATCAACCTCTGAATCAGAAGATGAAGATATATCCCTACATGACGAGTCCTCTGATGAATTAGAAACCTTTAGTGATTTAGAGGTCGAGCATAAAGAAGCTAATGTCTCAGACTTGAAGTTGTATGATTTTATTCTTGTATCATTTAATACAAAAAAGTCCAGATTCTTGTTTGTGAGACAAATTGAAGAAATCGTGGAAGAAAATTCGTACAGGGTAAAATTTATGAAGAAAAATGTCGTAGAGATAGAAGACATCAAAATGAAACTGCCGGCACCTGATATTCCTGGGGGAACTAAAAGAGCTGCTTCTTCACTATCATTGAAAGTCGACTTCTCTAGTTTTAAGGATAAATACTATTCATTCTTTCCAGAAAATAAAAAAATTCACATGCCACCCGAGATTGAAGAAGATCCTCCCTATCAAAAGTGGTGGTTGCAAGTCAAAAGGAGTCCGGTGACTTATACAGAACCACAAGCTTTTGATTGA
Protein Sequence: MVRNYKKKKEESAYNEEDIQVAIRAVRDQQMTLREAAAYYGMSHTALRYRLKKLKFNDEGHVPSSVKHDYQSKYSSRQIFTKEQELSLVEYAINSSKMCYGLTYQQLRVLAYDYAARLDLEMPNSWSTNQIAGEDWLYGFMRRHRNLSIRRPENTLSRLTSFSKTNVKAFFDNYERALKLKNFTACHICNLDETGVATVIQAPNILAPRGAKQVGQAVSAEKGQSITLCMIISASGNSLPPVFIYPRARVNDSMVDDGPPGSIVLANSPGSHWMTRALFLHVLKHIVNHTKCSSENPILILMDNHESHCSLDAVNYARENGITLVTFPPHCSHKLQPLDAGVLGPFKAKTKVAQNDWLTNHPGRTISIHNLPSIVTRAFDSSFTRANIISSFKKPGLWTLNRQVFTDEDLLSSAVTDRPIPDEPVCEPIEQAASSDTDNCSIPSKDINVCPNLSTPSIDPSYILGCSKDSETIQIDPAHNKSLVLISPEHFRPYPKAPPRSNSLRERRKGKNTLEDEQLERESKKMKLTKTKPEKIRQVEKNICKSLEVSTSESEDEDISLHDESSDELETFSDLEVEHKEANVSDLKLYDFILVSFNTKKSRFLFVRQIEEIVEENSYRVKFMKKNVVEIEDIKMKLPAPDIPGGTKRAASSLSLKVDFSSFKDKYYSFFPENKKIHMPPEIEEDPPYQKWWLQVKRSPVTYTEPQAFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -