Lcra003940.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:20743401-20745772[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 2.4e-06 28.7 0.0 1 35 15 49 15 54 0.92
Sequence Information
- Coding Sequence
- ATGCCAAAAGTGTCTGAAGGTGCTTCCTATCGAAAAAAATATAAAGAAGAGGATATTTGTAAGGCTTTGGAGTCTATAGAGGATGGAATGAGTCAAAGAGAAGCTTCTAAGCTTTATCATGTTCCTCGGGCCACACTCCAATTCCGGTCGAGTGAAAAGTTCAACAATAAAGTTTCTCTCGGACACAAACCAATATTGACTTTCGAAGAAGAGGCACTATTAGAAAACTGGATTTTGACCTCtcacaagaaaggttttccgcgtagaattgaggacattcaaacctctgtaaagtatttccttgacgaatctcctagagaaaatccatttaaagagaaccttccaggaagagggtggtatctagcttttttaaaacgtcacccaaatataaccctgagaacctctgaaggaattacagcagctagttccgtagtagcagaagcagatattagaagttggttttccaatgtggatgattatttaaagcgtaagcaattatcagatgttcttgaagatcccagcagaatatacaatggagatgaaacctgcttttggctttgtccaaaaaacaaaaaagttcttgcaccaagaggaacaaagaacgtttacgaaatagaacatcatcccaagaataatatcacggtgatgttcacattttcggctagtggagatgtaactcctcctatgatcatatatgcatataaaagattaccgtccgacatcGCCGAAAACATAATAGAAAATGAAAATTATGAATCAAAGTCAAAAAATCTTGAACGTGAGAGTATCAAATCAAACGATCAGAATATTGAGGCAGATCTTATGGAGACTGATACTGAAATCAATCAAGTATTCGACAATGAAAGAATTCCTATTGTGATAGAAGAAAATATCAATTATTACGACTGCCAAATGCCTAGTACCTCATCGGCCAACAAAGAATGTGGACCAAACACATCATCACTTAGTGATTACGTAGTTTGGCCCAAAACCCCAGAAAGGATGGGAAAAAGAGAGACAGAAAAGCTACCCTTTGTACTAACTTCATCAGTTAGAAAAGAAGCAATAAAGAAGAAAATAGCATTGAAAAAGGAAGTCGAAGAAAAAAAAGAGAAACGTAAGACTGAAAGGTTGAATAGGCAACACATGAAGGAAGTACTTTCAATAAAAGGAAAAAAAATAAAGGGATTGAAGGCACCGATTAAAAAAGGCAAACCGAAAATAACTGATGGCGAGGCCATAGTTTTAACCAGAAACGAACAACACAATCCAGAGATTCCTGAAAATAATGAAGATCCAGAAGCCGCCCACATTTCAAATAATAATTTTTCTGAAAATAAAGAGAATATTGAAGACATAACCGAAGCCGTTGATACCGAAGAAATCATTCAACCCAAAAATGACTGCCAAGATGAACCCGAATGTGTTATCTCAGTTCCGGCGGAAACTAAAAGAAGACTGTTTACAGACGAGAAGATCGATGGTGATAAGAAAGCAGTTAACATAACCAGAATGGTTATCATAAAAGCAGCTTCTCCGAATACATTCCAGAATCAAACTATTTACGCTGGATTATGTTTTTCGTGCACAAATAATTTGAGTAGAAGCCAATATGGGATAAGATGTAGATATGAAGTCTATTGGTATGAACCAATTTATGTGCAATGTCTGTTTTGA
- Protein Sequence
- MPKVSEGASYRKKYKEEDICKALESIEDGMSQREASKLYHVPRATLQFRSSEKFNNKVSLGHKPILTFEEEALLENWILTSHKKGFPRRIEDIQTSVKYFLDESPRENPFKENLPGRGWYLAFLKRHPNITLRTSEGITAASSVVAEADIRSWFSNVDDYLKRKQLSDVLEDPSRIYNGDETCFWLCPKNKKVLAPRGTKNVYEIEHHPKNNITVMFTFSASGDVTPPMIIYAYKRLPSDIAENIIENENYESKSKNLERESIKSNDQNIEADLMETDTEINQVFDNERIPIVIEENINYYDCQMPSTSSANKECGPNTSSLSDYVVWPKTPERMGKRETEKLPFVLTSSVRKEAIKKKIALKKEVEEKKEKRKTERLNRQHMKEVLSIKGKKIKGLKAPIKKGKPKITDGEAIVLTRNEQHNPEIPENNEDPEAAHISNNNFSENKENIEDITEAVDTEEIIQPKNDCQDEPECVISVPAETKRRLFTDEKIDGDKKAVNITRMVIIKAASPNTFQNQTIYAGLCFSCTNNLSRSQYGIRCRYEVYWYEPIYVQCLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911778; iTF_00911773; iTF_00911774; iTF_00911806; iTF_00911782;
- 90% Identity
- iTF_00911773; iTF_00911774; iTF_00911778; iTF_00911782; iTF_00911806;
- 80% Identity
- -