Lcra010412.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:115015809-115017988[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 4.2e-07 31.1 0.0 3 44 16 56 14 56 0.94
Sequence Information
- Coding Sequence
- ATGCCCAGACGTAGAAATCAGGGCCTAAGGGGTAACTGGGACGCAGAATCGCTGCAAAATGCCATAAATGATACTCAAAATGGCATGCCTGTAAATATGGCGAGTAACACATACGGCATTCCTCGGCGAACTTTAAGAGAATATCTGCAGAAAGGAAACATGGCAAAATTTGCAATGGGTCGAAAAACGATCATCTCGCCTGAACAAGAGGAAGAGCTTTGTAGGAGAATAATCCGCCTGTCGGAAGTAGGATACCCATTAACTGCAAAGGTATTACGTCGATGTGTTTACAATTTTTGTGTGACAAACAATATCAAGAACCCATTTAGTGCTGAAAAACAAATGGCTGGCCGTTTCTGGCTGAAGCATTTTTTTAAGAGGCATCCTGAAATCAGAGTGCGCAAAGCTCAACGTTTCGGAAGCATCCTCTCAGTTGTATGGGATAATTGTATGACACCAAAAAATATCAAATCCGGATTTTCAGCTTGTGGCATTTATCCCTTCAATCCGGACATACTGCCAGAGGTTGCTTATGCACCAAGTACTGTGACTGAAAGAGAAGACCCAGAAATAAACCAAATTGAGCCAGCCCACAGGGATGACAATCAACAAGTTTTATCAACAAACCGTTCAGTAAAACCTCCGATAATTCGAGAGAATACACCATCTCCTGGCCCTTCTGGTGTGGCTCCCAAACGTCGACGCTTGGGCAAAAAACGATACAGTAGCAGCAGTGACAGCAATGTGGATTCCGAAAGCAATTCCGAAAATTCTAATGCCGAAGAAAAATTAGACGTTACCTTTTCTGAAATGCTTGAGACTCCAGATATGACCCAAAAACCTACAACTCGTCGAAATACAGCAATAAACAGCAGAGCTCAAAGGATTACCAAAGACCTCTTTAAAAAGACTGATCCGAATGTTAAAACATTAGTGCCAACAAGAAAGGAGTCAAAAAACATAACCAAGTGCAGTTCGTCAAAATCGACACTAAAGGAAGGCGATAAAGCCATTAGCAAGAAAGATGCTCCTAAACTTCAACTACAGAAAAACAGTTCAAATAAGGCTAGTTGGTATTGCAAAGCCTGCAAGGAAGACAGGAAAGCTGATATGCATTTATGCTTTTCTTGCAAATGCTACCTGCATGACGAATGTAAGTATATTTATGCAATTTGCTTCAACAACTGA
- Protein Sequence
- MPRRRNQGLRGNWDAESLQNAINDTQNGMPVNMASNTYGIPRRTLREYLQKGNMAKFAMGRKTIISPEQEEELCRRIIRLSEVGYPLTAKVLRRCVYNFCVTNNIKNPFSAEKQMAGRFWLKHFFKRHPEIRVRKAQRFGSILSVVWDNCMTPKNIKSGFSACGIYPFNPDILPEVAYAPSTVTEREDPEINQIEPAHRDDNQQVLSTNRSVKPPIIRENTPSPGPSGVAPKRRRLGKKRYSSSSDSNVDSESNSENSNAEEKLDVTFSEMLETPDMTQKPTTRRNTAINSRAQRITKDLFKKTDPNVKTLVPTRKESKNITKCSSSKSTLKEGDKAISKKDAPKLQLQKNSSNKASWYCKACKEDRKADMHLCFSCKCYLHDECKYIYAICFNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911639;
- 90% Identity
- iTF_00911727;
- 80% Identity
- -