Lcra051712.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387432.1:34281554-34283866[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-11 6e-09 37.0 0.0 3 44 16 56 14 56 0.94
Sequence Information
- Coding Sequence
- ATGCCCAGACGTAGGAATCAGGGCCTAAGGGGTAACTGGGACGCAGAATCGCTGCAAAATGCCATAAATGATACTCAAAATGGCATGTCTGTAAATATGGCGAGTAACACATACGGCATTCCTCGGCGAACTTTAAGAGAATATCTGCAGAAAGGAAACATGGCAAAATTTGCAATGGGTCGAAAAACGATCATCTCGCCTgaacaagaggaagagctttgtaggagaataatccgccagtcggaagtaggatacccattaactgcaaaggtattacgtcgatgtgtttacaatttttgtgtgacaaacaatatcaagaacccatttagtgctgaaaaacaaatggctggccgattctggctgaagcatttttttgagaggcatcctgaaatcagagtgcgcaaagctcaaaatatgaatccagcgagggctcaaaagctaaacaaatttattgtttctgaccattttaataaactcggagctcttcttatcgatttagacataatggataaaccgaagcatatttacaatatggacgagaaaggatgccgtttgggtttacatcataagcaaggtgtgctcgcgaaaaaaggtgctaaaagagttcaccttgtggctaaagaacattcagagaatgtaacagtggttgcatgcagcaatgcaatgggatcttctattcctccttatattctttttaagggtataagaatgaagccagagtgggccgacgacttaccagtaggtagtaagatatcaatgacgccaaaggctagcatgaccattgaaacatttaaaaagtggctttatcactttaaccagtatagattgcctggaccttgcgtgctaattttcgatgggaccaagtgtcatttagaccattcgattgtaacaactgcagatgatttgggcataactttatattgcttgccaagcaacacaacacatgaactgcaacccatggataaggctgtgttccgttcatttgaacattattgggacgatgaggtCATGAAATTTTGGTCAAGATACAGAGACCGATCCTTAACTAAGCAACCTTGTGGCATTTATCCCTTCAATCCGGACATACTGCCAGAGGTTGCTTATGCACCAAGTACTGTGACTGAAAGAGAAGACCCAGAAATAAACCAAATTGAGCCAGCCCAAAGGGATGACAATCAACAAGTTTTATCAACAAACCGTTCAGTAAAACCTCCGATAATTCGAGAGAATACACCATCTCCTGGTCCTTCTGGTGTGGCTCCCAAACGTCGACGCTTGGGCAAAAAACGATACAGAAGCAGCAGTGACAGCAATGTGGAAGTGTTTGAAAGCTCTTTCGAGGGTGATACTGGCAACGATTCCGAAAGCAATTCCGAAAATTCTAATGCCGAAGAAAAATTAGACGTTACCTTTTCTGAAATGCTTGAGACTCCAGATATGACCCAAAAACCTACAACTCGTCGAAATACAGCAATAAACAGCAGAGCGCAAAGGATTACCAAAGACCTCTTTAAAAAGACTGATCCGAATGTTAAAACATTAGTGCCAACAAGAAAGGAGTCAAAAAACATAACCAACAAGAAAGATGCTCCTAAACTTCAACTACAGAAAAACAGTTCAAATAAGGCTAGTTGGTATTGCAAAGCCTGCAAGGAAGACAGGAAAGCTGATATGCATTTATGCTTTTCTTGCAAATGCTACCTGCATGACGAATGTGTACCTAAATATTTTATTTTATTTGTTATATATAAAATCTCTGTTCCATTCATGAGTAACTGA
- Protein Sequence
- MPRRRNQGLRGNWDAESLQNAINDTQNGMSVNMASNTYGIPRRTLREYLQKGNMAKFAMGRKTIISPEQEEELCRRIIRQSEVGYPLTAKVLRRCVYNFCVTNNIKNPFSAEKQMAGRFWLKHFFERHPEIRVRKAQNMNPARAQKLNKFIVSDHFNKLGALLIDLDIMDKPKHIYNMDEKGCRLGLHHKQGVLAKKGAKRVHLVAKEHSENVTVVACSNAMGSSIPPYILFKGIRMKPEWADDLPVGSKISMTPKASMTIETFKKWLYHFNQYRLPGPCVLIFDGTKCHLDHSIVTTADDLGITLYCLPSNTTHELQPMDKAVFRSFEHYWDDEVMKFWSRYRDRSLTKQPCGIYPFNPDILPEVAYAPSTVTEREDPEINQIEPAQRDDNQQVLSTNRSVKPPIIRENTPSPGPSGVAPKRRRLGKKRYRSSSDSNVEVFESSFEGDTGNDSESNSENSNAEEKLDVTFSEMLETPDMTQKPTTRRNTAINSRAQRITKDLFKKTDPNVKTLVPTRKESKNITNKKDAPKLQLQKNSSNKASWYCKACKEDRKADMHLCFSCKCYLHDECVPKYFILFVIYKISVPFMSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911645; iTF_00911664; iTF_00911650; iTF_00910469; iTF_01105673; iTF_00911690; iTF_00911663; iTF_00911647;
- 90% Identity
- iTF_00910469; iTF_00911650; iTF_01105673; iTF_00911690; iTF_00911664; iTF_00911663; iTF_00911645; iTF_00911647;
- 80% Identity
- -