Lcra035892.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387429.1:21034500-21037629[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-05 0.0027 18.9 0.0 3 37 36 70 34 74 0.92 2 2 1.5e-05 0.0024 19.1 0.1 3 37 109 143 107 149 0.91
Sequence Information
- Coding Sequence
- ATGGGCGAAACGAGATTAATCCTAAATTTTATAATGTATGTGGAGACACTTTCGAGGTTGATAAGAGTTCCGGAAAATTTAGATGCTAGACAAAGTAGGTCAACAGAAAGCTTGGAGCAAGCTGTCGAGGCGGTTGTTAATAGGGAAATGGGCTACAAAAAATCAGCCCAACAATTTAATCTACCACAGACGATATTGGAACGATATGTGGCTAAAAAGAAAAGATGTGGAGACACTTTCGAACTAAAAGGAAAAGATGTGGAGACACTTTCGAGGTTGATAAGAGTTCCGGAAAATTTAGATGCTAGACCAAGTTGGTCAACAGAAAGCTTGGAGCAAGCTGTCGAGGCGGTTGTTAATAGGGAAATGGGCTACAAAAAATCAGCCCAACAATTTAATCTACCACAGACGATATTGGAGCGATATGTGGCTAAAAAGAGCAGATACACTTTCGAGGTTGATAAGAGTTCCGGAAAATTTAGATGCGTTTTTACAGAGTTACAGGAAAAGGAGTTAGAAGACTACTTAGTAAACATGGAAGCCCGATTGTTTGGGTTAACAGTGACGGATTTAAGAAAATTGGTCTACCAACTTGGTGTTCAAAATAACTGTAGTGAAAGATTCAAGTCCGAGAACCATCTCGCTGGGAAAGACTGGGTTGAAGGGTTTTTAAAAAGACACCCTAAATTATCATTACGAAAATCAGAAGCAACATCTGGAGCTCGGGCAATGGGTTTCAATAAAGTTGCCGAATCCCAGTTTTTCAAATTGCTCGAAGAAACTGTCGTCAAATATAAATTTACAGGTGATAGAATTTATAATTGCGATGAGATGGGTATTACTGTTAACCCAAAAGGTCATTCTAAAATAATATCATCCAAAGGAAAACGTCAGGTAGGAATACTTACTTCTGCAGAACGGGGACAGACAGTAACGGTTGAAGTATGCTTTTCCGCTTCAGGAGCTTATATGCCACCTCTACTCGTGTTTCCGAGAAAACAGATTCAAAAAGAATTTGAACTTGGTTTGCCATTGGGATCTATAGTGAAACTCGGCGATTCAGGCTGGATGGATGGAGAGGTATGTATGGACTGGTTTAAGCAGTTTGTAAAATTTTCTGGAGCGACTCGCGAGAATCCAGTTTTTTTGCTTTTGGATGGTCATACAAGCCACACTAAGAGCCTTGATTTGATACTTTACGCAAGAGACAACGGGGTAGTCTTACTTTGTTTTCTTTCCCATTGCTCTCATCGGTTACAGCCGCTTGACGTAGCATTCATGAAACCTTTGAGTCCATATCATGAGCACGAAACGAGAAACTGGTTAAGAGGTGATACTGGGACAGCGTTTATAAATGCAGCAACAATGAAAACAGCTGTGAACGTATTTAAGAAAACTGGTATTTGGCCTTCAAATGCCCAAGTTTTTGGTGAAGCAGATTATTTTCCGTCTGATACAACAGATATTCCAAGAGAAACTGAAAGTGTAACAAACAATGAAATAGCTTTACCAGCAACTTTGGAACAAACTGTAACAACTACAGTGCAAGTGGAAACGATCAACAATTTTGAAGAGCAACCGCATTGTTCTAGACATCGAACTCCTCCGAGACAGTCTAAAACTTCCGTTAATTTGCAGCATGTTTCTCAAATTTGTGCACTTCGCTCACGCCTCTCCTTCTGA
- Protein Sequence
- MGETRLILNFIMYVETLSRLIRVPENLDARQSRSTESLEQAVEAVVNREMGYKKSAQQFNLPQTILERYVAKKKRCGDTFELKGKDVETLSRLIRVPENLDARPSWSTESLEQAVEAVVNREMGYKKSAQQFNLPQTILERYVAKKSRYTFEVDKSSGKFRCVFTELQEKELEDYLVNMEARLFGLTVTDLRKLVYQLGVQNNCSERFKSENHLAGKDWVEGFLKRHPKLSLRKSEATSGARAMGFNKVAESQFFKLLEETVVKYKFTGDRIYNCDEMGITVNPKGHSKIISSKGKRQVGILTSAERGQTVTVEVCFSASGAYMPPLLVFPRKQIQKEFELGLPLGSIVKLGDSGWMDGEVCMDWFKQFVKFSGATRENPVFLLLDGHTSHTKSLDLILYARDNGVVLLCFLSHCSHRLQPLDVAFMKPLSPYHEHETRNWLRGDTGTAFINAATMKTAVNVFKKTGIWPSNAQVFGEADYFPSDTTDIPRETESVTNNEIALPATLEQTVTTTVQVETINNFEEQPHCSRHRTPPRQSKTSVNLQHVSQICALRSRLSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -