Lcra031726.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387423.1:80982113-80984266[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-11 9.2e-09 36.4 0.0 2 42 18 58 17 60 0.93 2 2 5.4 8.6e+02 1.3 0.1 21 43 396 418 390 419 0.85
Sequence Information
- Coding Sequence
- ATGCCAAACAAGTACATAAGAAAATCTGTGCAAACACGTGGTACGTGGTCACAAGATGATCTGTCACAGGCAATCAAAAGTATTGTTGATGGAAATAGTTCTGTTCGTCGAGCCTCTATTGAATTCAACATACCACGTAAGACCTTAGAACGTAGAATTAAAACCGGAAATTCTCAAAAGGGAATCATGGGCCCTAGCAGCGTCTTTGGAAGAGATAATGAAGTTCTTCTATCACGACATGTTCTGTCTGTGCAAAAACGAGGTTTTCCATTAACCATAGACGACATCAGGACCATCGCTAATCAATTCGCAGAACAGCTAAGAATTAAACACAAGTTTGATAACGAAATTGGAAAAGCTGGTTACTGCTGGCTTACTTTGTTTTTAAGCCGTCTTCCAAAAATTAGTATTCGTAAATCAGACGGTGTCTCCATAGCTAGAGTAACGGCTATGAACCGAAAAGAAGTGGGAGATTATTTTGATTTACTTGAAACAACTATGGAACAGAACTCTTTATTTGataaacctgcaaacgtattcaatatcgatgaaacgggtctccaactcaacagtagaccaggcgaagtgcttgccagaaaggggtccaaagctgtgtcgacggtaacattcaccgaaaagggagaaacagtcagtttggtagtttgctgcaatgctgagggtaacttttcaccgcctgcggttataatgaagggaaaaaatagaaaacaagagtgggaagatgatctgccaccaggatctatgttgtttatGGCTGCCTACATCAACGCCACTATTTTTCTTCAGTGGATGCGTGCACATTTTCCGCGATCGATGCGCTTCCTCTCAAAATCTCGACGGGAGAACGTGGTAACTCGTGATCTGACAGTGACAATGACGGGACTTCTACATTTCAATCGCAATATTATACCGGATTATGCTTTCTCTGTTGAAAAAACCACTCCGGCAAAAACTGTAAACTTATCGCCTCAAAAACAAACAGAGATTACAAACCAACCAAACGGTAACTTCGAAGCACAGCCATCAACCTCTAAAACCATAAATGACAAAATAACTCCCTCGAAAATATTGTCCGACTTGTCGCCATCTGCTCCAAAAAAATTAATGCAGTTAGAAAACGAGCTAAGCAAAAAGACCCAAGAGAAAGAAAAAAAGGCTGGAGACAAAAAGGCTGCAAATAAATATAAAAAGGTATTCAAGACAATAAAGAGAAGAAAAAAGGAAAGTAATTTTAGAAAGTGA
- Protein Sequence
- MPNKYIRKSVQTRGTWSQDDLSQAIKSIVDGNSSVRRASIEFNIPRKTLERRIKTGNSQKGIMGPSSVFGRDNEVLLSRHVLSVQKRGFPLTIDDIRTIANQFAEQLRIKHKFDNEIGKAGYCWLTLFLSRLPKISIRKSDGVSIARVTAMNRKEVGDYFDLLETTMEQNSLFDKPANVFNIDETGLQLNSRPGEVLARKGSKAVSTVTFTEKGETVSLVVCCNAEGNFSPPAVIMKGKNRKQEWEDDLPPGSMLFMAAYINATIFLQWMRAHFPRSMRFLSKSRRENVVTRDLTVTMTGLLHFNRNIIPDYAFSVEKTTPAKTVNLSPQKQTEITNQPNGNFEAQPSTSKTINDKITPSKILSDLSPSAPKKLMQLENELSKKTQEKEKKAGDKKAANKYKKVFKTIKRRKKESNFRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -