Lcra052060.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea crataegi
Gene Symbol
ct
Assembly
GCA_947563755.1
Location
OX387432.1:42070064-42073833[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.6e-33 2.5e-28 99.4 0.0 3 77 239 314 237 316 0.96
2 2 2.8e-31 1.5e-26 93.7 0.0 3 75 449 522 447 526 0.95

Sequence Information

Coding Sequence
ATGAATAAGAGACTCAAGAAATACGAAAACGACGATATCTCCCAAGACAAAGTTGTTCGAATTTACCAAGAAGAATTAGCCAAACTTATGGGAAGAAGATTAGAAGATTTTAGAGGCCAGCGGGAGGGACCTTTTCCTGGTTTGTTTCTTCCTCATCTCTATAGCGGAAATACTTTAGAACGAACGCCCGAAGATCTTAGACTAGTTCTTGACGCATATCATCGAGAATTCGCTAAATTAAATCATGGCCAAAATCCAACTCAGATGCCGTTAAATCTTTTAGCTATACAACAACAAGCAATCGCCCATCATCAACAACAACATCAAAACTCTAACGGAGGCGTTCAGGATCTCTCCATTCCCAAGGATAAAATGAAAATGGTAAATGGCAACGTGGATGAAAAAGACAAAGACGATGATCCTATGTCACGCCATTCGGGGTCTGCTTTCAGCTTAGTAAGGCCGAAGATTGAACCAGGAACCCAACCTAGTACAGGATCAACAGCTTCCAGTCCTCTAGGTAATTCAATTCTACCTCCCATGACTCCAAACGATGATTTTGCTGGTTCGGCAGCAGCGTCTCCGCTCCAACGAATGGCAAGCATCACGAATTCTCTCATATCACAACCTCCATCCCAGCCACATCCGTCAAATAACAATAGACCTCTTAAAGCAGTATTACCGCCAATAACTCAACAACAATTCGACCTCTACAATAACTTAAACACTGAAGATATCGTTAAAAAAGTCAAAGAACAATTAAGTCAGTATTCTATAAGCCAGAGATTGTTCGGTGAAAGTGTATTGGGATTGTCGCAAGGATCCGTTAGTGATCTTTTGGCCAGACCCAAACCTTGGCATATGTTAACACAAAAAGGAAGAGAACCTTTTATTAGAATGAAAATGTTTTTAGAAGACGACAATGCCGTCCATAAATTGGTAGCCAGTCAGTACAAAATTGCACCGGAGAAGTTAATGAGAACAGGAGGATATGGAGGAGCTTGTTCATCCATAGGAAAACCAATGCCTCCAACAAACAAAATGTTATCGGAAGCGGCAGGTCTCCTTAATAAAATGCAAGAATCACAAAACATATTACCTCCGTCTCTTCAACTCGGACCTCCACAAGGAATGAATCCTCAACCCCCGCCACCTCCTATGTTATTAACACCACCTGGTCTACCACCGCATCATGCAATCAACATCCAAAATCAAGATCTCATGAAAAAAGCCAATCACAGTCCACACGGTATTCCACATTCACCGATGGCCCAGCAGCTTACACCACTCAGAAACATGCACCAACACATTTCTCCCAGTGTTTATGAAATGGCAGCTCTTACTCAAGACTTAGATACTCAAATTATTACCACTAAGATCAAAGAAGCATTACTCGCTAATAATATTGGACAAAAGATATTTGGCGAAGCTGTTCTTGGTTTGTCGCAAGGATCCGTTAGTGAACTTTTGTCAAAACCGAAACCTTGGCACATGCTCAGCATAAAAGGTCGAGAACCCTTCATAAGAATGCAACTTTGGCTAAACGACGCCCACAACGTAGACCGGTTGCAAGCATTAAAGAACGAAAGGAGAGAAGCTAATAAGAGGAGAAGATCATCCGGTGCTGGTGCTCACGATAACAGCAGCGACACTTCTTCGAACGACACCTCAGAATTTTACCATTCAAATTCACCTGGTCCAGGACCACCGTCGGCAAAAAAACAACGAGTGTTATTTAGCGAAGAGCAAAAAGAAGCTCTGAGGCTGGCTTTCCATTTGGACCCGTACCCTAACGTTAACACCATCGAATTTCTAGCGACTGAACTTGGTTTATCGTCTCGAACTATCACAAACTGGTTTCATAATCACAGGATGCGTTTGAAACAACAAGTACCACACGGACTACCTTCTGATTTACCTCCCAGAGATCAAACTGGCAATCAACAGACTTTCGATCCAGTGCAATTTAGGGTACTTTTAAACCAAAGATTAATCGAACTTTCGAAGGAAAGAATGGGCTTGAGCGGGGTTCCTCTACCTTACCCGCCTTATTTAGCAACGAACGCGAATTTAGCTGCTCTAATAAGTCGAGGATTGTTGCCACCTGGTGATATCGACTTATCGGCTTTAAATAATGCTGTTAAAGAACAAATGAGCGGTTTAGATCTGTCTATGACGTCTTTAAAAAGAGAACCCGGTGATTATGATGATGATGAAGATGTCGAAAGTAACGTCGGATCAGAAGATTCGAATATGTCGGGCGGAAGTCTTCGTGGCGAAGTAAAAACGGAGCCCAAAGAAATACCTTCGAATCAAAGCAGGTCGTCGAGACGAAAACCCGCAGCACCTCAATGGGTTAATCCAAATTGGGAAGAAGAAAAAGAAAAGACTAACACAGGAGACGAAGTTATCATTAACGGAGTTTGTGTGATGCAGACTGGTGACGACTACGGGCGACGGAACGCCGAGGAAACCGTTCGAGTGGAACCTCAAGCGGTACTCGATAGGTTCGAAGACGATCAAAGCGATACGTCTTCGATTAGTAACGATAACGAACAAACGGACAAAATAGACGAAAAAGAAGATGTTAGTGAAATTAAAACAGAGGACAGTGAAAATAAAAACCTTAATCAAGAAAACGAAGAAGAAAGGTGGGAGTACTAA
Protein Sequence
MNKRLKKYENDDISQDKVVRIYQEELAKLMGRRLEDFRGQREGPFPGLFLPHLYSGNTLERTPEDLRLVLDAYHREFAKLNHGQNPTQMPLNLLAIQQQAIAHHQQQHQNSNGGVQDLSIPKDKMKMVNGNVDEKDKDDDPMSRHSGSAFSLVRPKIEPGTQPSTGSTASSPLGNSILPPMTPNDDFAGSAAASPLQRMASITNSLISQPPSQPHPSNNNRPLKAVLPPITQQQFDLYNNLNTEDIVKKVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGACSSIGKPMPPTNKMLSEAAGLLNKMQESQNILPPSLQLGPPQGMNPQPPPPPMLLTPPGLPPHHAINIQNQDLMKKANHSPHGIPHSPMAQQLTPLRNMHQHISPSVYEMAALTQDLDTQIITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLNDAHNVDRLQALKNERREANKRRRSSGAGAHDNSSDTSSNDTSEFYHSNSPGPGPPSAKKQRVLFSEEQKEALRLAFHLDPYPNVNTIEFLATELGLSSRTITNWFHNHRMRLKQQVPHGLPSDLPPRDQTGNQQTFDPVQFRVLLNQRLIELSKERMGLSGVPLPYPPYLATNANLAALISRGLLPPGDIDLSALNNAVKEQMSGLDLSMTSLKREPGDYDDDEDVESNVGSEDSNMSGGSLRGEVKTEPKEIPSNQSRSSRRKPAAPQWVNPNWEEEKEKTNTGDEVIINGVCVMQTGDDYGRRNAEETVRVEPQAVLDRFEDDQSDTSSISNDNEQTDKIDEKEDVSEIKTEDSENKNLNQENEEERWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00885690;
90% Identity
iTF_00911618;
80% Identity
iTF_00911618;