Lcap013112.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- pnr
- Assembly
- GCA_949126875.1
- Location
- OX421398.1:22386720-22397386[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 1.3e+04 -2.5 0.1 15 24 339 348 339 348 0.87 2 2 2.6e-16 1.9e-12 48.2 3.6 1 34 365 397 365 399 0.98
Sequence Information
- Coding Sequence
- ATGGACAACTCTAATATATATGAAAAAAAGCATCAATCAGAAAAACTTCTGGAAAATCTGACAACCTCAATACACACATTACCTCCCGATTTTAAAATCGAACGACCACAACTAGTTTCAAATGAAAACTTCTTGACGCCCACCAGAACACCGATAGAACCACTGGAAGTGAAAACGatggaaataaaaacagaacCTGTATATATGGATGAAGGAGAAATATCACAAGCGTCACATGAACCTAAGAAGTTCGATGGCGAAAGTGTAAATGTTGTTCCCAAAGCTGAAGCATCCGACAATCTTCTGCCCCCTCAAGATGTTTCCATGGATCTGTCCAAGGATAATACCGAAGAATGTGTGCGCGAACCTTTAATAAAGgTGAAACCTCCCAGTGCCCTACACTACACAACCGAAAATAGTATTGCCGATTTATCTAATATTCCTAGAATGATTACTCAAGATTTCAGTCGTTTTGTAAGCGAAGATAAAAACGATAACACTTGTCCTACTGAACCTACCGATCTATcgaataaaaaaactgaaaaattgacatGTGTGCCTGAAATCGGTTACATCAAAGAAGAAATTGATGCTGTTTCAGTGTCGAGCAACAGCTCTGATCCGGAACGATTAGAAGTGGACATGTCTCAGGTAACTGAAGAGCAAAGTGATTCAACAAACAGCGAAACGTCCCCTAAATCCGAATCAACGTTGAATCAAAATGAAGTTGATCCTGCACTTTGGCAGACACTTTCTCGAAATGGTTATAATCCCTCTTTGAGTGGAGAAGCTAGCCAGTTACTAAGAAAGCTTATAACCTGTCGAAAATTGGGCATGACTATAACTCCCGCACAGCCGCGTGTTTTAAATTACACATTATTTGACGAGAGACAAGCATCTGCAGATAGTATTAATCAAAAAAATTCGTGTAGAAGAAAACAAAGCTATCCTTCAAAGGCAACTGTTCCACCTGAAGGTGCTCCAATGGAACAAGATAATGAAGATTATGAGTATGGACCAGATAATTCTCTTATCTTATGCAATTTGGGGAAGGGAAAGAAAATGGAGTTGAAACGAATGGTAGCTATATCTTGTACAAACTGTGGTACTCAAACAACGACGATTTGGAGACGTAATCTAAGAGGGGAGATGGTATGTAACGCTTGTGGTCTTTATTTCAAATTACACGGAATAGACAGGCCTGTTACAATGCGAAGAGACACAATTCACACTCGACGTAGAAGGCCAAAAGCGGCTGAATCAGAAAAACCGCATTCTAAAGAATACAGTCCATTCAGCAATCCTCCAGTTCATACGTACAAAGGGAAAATTGTTAAAGcATCTTCCAAAGAAAAAAGCAATACCGAATCATCCGATACAGAGGACATGTTGAGTGCATTAAGGCGCCAACTTCAACCTCACTTGGTGATGGCCTTACAAGGACAtcgaaataatttaaattccaaCCCAGATGGTAGTCAGAGAGTTCCGTCACGCGCACACATACAGAATGGAAAGTGCTCTAGAGAATTTGTCGGAATCAACAAATTCAGTCAATTTCCTATGGAAACAGCTCTGTATTTAAATCTGCCTTTTCCTCATGAATACATCAGACATAGCTTTCGCAGAACTTCCACTACGCTACTAGTGGATGCAGGAAGTGACCTTCTTCAACTAAAACGCCACGGAGGGTGGAAGGATATGTGGACAAATGAAGTAGCAATAAAAATCAAACACAGACCAAGATTTTACAGTCTGTACAAAATGCAACAACAGCTACGTCGGGGTACAATTGCGGCGCATCTTCATCTGGGTCCACCTTTACCAAATTTCTTGCCATTAGAGAAATCCAGTGGCGTCTCCACACGGGAAGCTGAATCCGATGAGGACAGCATAGCAGACCTACCGTTAAACCTTGTTTCGACACATATGACTGAGGgtgaattaatttaa
- Protein Sequence
- MDNSNIYEKKHQSEKLLENLTTSIHTLPPDFKIERPQLVSNENFLTPTRTPIEPLEVKTMEIKTEPVYMDEGEISQASHEPKKFDGESVNVVPKAEASDNLLPPQDVSMDLSKDNTEECVREPLIKVKPPSALHYTTENSIADLSNIPRMITQDFSRFVSEDKNDNTCPTEPTDLSNKKTEKLTCVPEIGYIKEEIDAVSVSSNSSDPERLEVDMSQVTEEQSDSTNSETSPKSESTLNQNEVDPALWQTLSRNGYNPSLSGEASQLLRKLITCRKLGMTITPAQPRVLNYTLFDERQASADSINQKNSCRRKQSYPSKATVPPEGAPMEQDNEDYEYGPDNSLILCNLGKGKKMELKRMVAISCTNCGTQTTTIWRRNLRGEMVCNACGLYFKLHGIDRPVTMRRDTIHTRRRRPKAAESEKPHSKEYSPFSNPPVHTYKGKIVKASSKEKSNTESSDTEDMLSALRRQLQPHLVMALQGHRNNLNSNPDGSQRVPSRAHIQNGKCSREFVGINKFSQFPMETALYLNLPFPHEYIRHSFRRTSTTLLVDAGSDLLQLKRHGGWKDMWTNEVAIKIKHRPRFYSLYKMQQQLRRGTIAAHLHLGPPLPNFLPLEKSSGVSTREAESDEDSIADLPLNLVSTHMTEGELI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -