Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421404.1:26212687-26215898[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.014 2.9 10.1 0.3 2 23 42 63 41 63 0.96

2 8 0.072 15 7.9 1.0 1 22 98 119 98 120 0.85

3 8 7.6e-05 0.016 17.3 3.6 1 23 126 149 126 149 0.97

4 8 3.5e-05 0.0071 18.4 2.2 1 23 161 184 161 184 0.95

5 8 0.00073 0.15 14.2 1.3 3 23 193 213 192 213 0.99

6 8 9.7e-07 0.0002 23.2 2.7 1 23 219 241 219 241 0.96

7 8 1.9e-06 0.00039 22.3 1.4 1 23 247 269 247 269 0.99

8 8 3.7 7.6e+02 2.5 0.5 3 9 383 389 381 396 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.014	2.9	10.1	0.3	2	23	42	63	41	63	0.96
2	8	0.072	15	7.9	1.0	1	22	98	119	98	120	0.85
3	8	7.6e-05	0.016	17.3	3.6	1	23	126	149	126	149	0.97
4	8	3.5e-05	0.0071	18.4	2.2	1	23	161	184	161	184	0.95
5	8	0.00073	0.15	14.2	1.3	3	23	193	213	192	213	0.99
6	8	9.7e-07	0.0002	23.2	2.7	1	23	219	241	219	241	0.96
7	8	1.9e-06	0.00039	22.3	1.4	1	23	247	269	247	269	0.99
8	8	3.7	7.6e+02	2.5	0.5	3	9	383	389	381	396	0.87

Sequence Information

Coding Sequence: ATGAATTCAAGGAACCTCGACCGcaagaaaaaacgaaaaaaaacaaaatctctaagaaaatcaaaatataaaaaaaaatctctcGATGACCATCCGCCACCGTTGAAATTAGACCAGCCGATTAAGTGCGAAGAATGCGAATCAACGTTCGATAACAATATAGATTTCGCACTACATTCAAAATCACACGATCAAGAGGGCAAATACACCTGTCATCTATGCATAAATTTTAGAAACGCCTCCAAGTACCAAATAGAGATGCATGTTAGAGCCCATGAAGGTACTACAAAGTACAAATGTGAAATATGTAATCAAGGATTTGCTATTAGTACGCACGCCGCTGAACACAAGTATTTTCACACCGGAGAGAAACCATTTCAATGTGAAATATGCGGAAAGCATTTTATGTATTCCTGGTTTTTATCCAGACACAGAAAATCAACCCATTACGAAATCCTCACCGGTAATCCTTTGGTTAAATACGACTGCTCTATTTGTAATAAACACTACGCTACTGCCTCTAGTTTAAGTAGACACAAACTAAGTAAACACAAAAAGATAGATGGATCCGTTCTTTGCGATATTTGCGGGAAGAGATTGTCTAGTAGGGAAAAGTTAAAGTTCCACCTTCGAACACACACAGGCTACAAACCCCATGCATGTCACTACTGTCCTAAAAGTTTTTCGAAGAAAGATCAACTCGTTGAACACGTCAGGGTACACACCGGTGAAAAACCGTACGTTTGCAAATATTGCGGCAGAGGATTTACCCAAAGGACTCCGTTAAAAACTCACGAAAAAACCCATAACAGAGAAGAACCTACAGCGTGTGTAATATGTGGGGTTGTTGGAGACtgtcctcatttttctaaaaaactgCCTCACCGTAAAAGTATCACACCTTGTGTAATTTGTGGCGAACTAGGTCCTTGTCCTCACTTGCCAGCGATGCCTTTGAAAGCTCCCAAAGACGAAGGTGTCGCGTGTCCTATTTGTGGATCTCAAAATATTTGCGAGCATATACTTAAGATGAGTATGATGACCCCGACGCGAGACGACGGGGCATGTTATATTTGTGGAGATTTGGGTTATTGTCCACATATTCCTAGGATTCCTTTTAAAACAACGAAAAATGAAGAGATGATATGTAATATTTGCGGGAAGATTGGATCTTGTGTACATCTGCAGAATATGATGGCGTTTCCTTTCCCTTAA
Protein Sequence: MNSRNLDRKKKRKKTKSLRKSKYKKKSLDDHPPPLKLDQPIKCEECESTFDNNIDFALHSKSHDQEGKYTCHLCINFRNASKYQIEMHVRAHEGTTKYKCEICNQGFAISTHAAEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKSTHYEILTGNPLVKYDCSICNKHYATASSLSRHKLSKHKKIDGSVLCDICGKRLSSREKLKFHLRTHTGYKPHACHYCPKSFSKKDQLVEHVRVHTGEKPYVCKYCGRGFTQRTPLKTHEKTHNREEPTACVICGVVGDCPHFSKKLPHRKSITPCVICGELGPCPHLPAMPLKAPKDEGVACPICGSQNICEHILKMSMMTPTRDDGACYICGDLGYCPHIPRIPFKTTKNEEMICNICGKIGSCVHLQNMMAFPFP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437584;
90% Identity: iTF_00459329;
80% Identity: -