Lcap033143.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
-
Assembly
GCA_949126875.1
Location
OX421405.1:10243494-10248197[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.3 2.6e+02 4.0 1.0 2 23 387 409 386 409 0.95
2 10 0.0034 0.7 12.1 2.2 1 23 417 439 417 439 0.97
3 10 1.3 2.6e+02 4.0 0.0 1 23 441 463 441 463 0.96
4 10 0.077 16 7.8 1.4 1 20 467 486 467 489 0.93
5 10 0.0006 0.12 14.5 1.7 2 23 508 530 507 530 0.97
6 10 4.5e-05 0.0092 18.0 2.0 1 23 536 559 536 559 0.97
7 10 0.00036 0.074 15.2 0.1 1 23 565 587 565 587 0.97
8 10 0.29 59 6.0 0.2 3 23 614 634 612 634 0.89
9 10 0.00044 0.089 14.9 0.7 1 23 669 691 669 691 0.95
10 10 0.00022 0.045 15.8 0.1 1 23 698 721 698 721 0.96

Sequence Information

Coding Sequence
ATGCCTGCCTGCTGTGTTTCTTATTGCAATAACAGAACCGAAAAAGGTATTAGACTTTTTATGCTTCCGCAGGGAGACCGAAATAAAGAAAGGAGAGATGCTTGGATCAAAAACATAAAACGAGAAGATCTATCATCAAAGGCACACGTCTGTGAGATTCATTTTGAGTATGATCAGTTTGAAAATCATAGAGAAGATGGTAAAAGGACATTGAAGAATAGTGCACTGCCCACATTGTTTAGTAAAGAACATCTACAAAAAGAATTGATGGAAGATAATACCAGGAGTACAAGAAGATCAACAAGGAAACGAAAACCTGTTGTTTTTGAGGAATACCAATCTGAAGATGAAGACTTGGAAGGTTCCCGATCTAAAAGTATAAAAACAGAAACTGAAGAGACAAGTGATGAGAAAGTAACTgaaccattaaaaaaaatcgagtTGATAAGATGTAGAACATGTTTGAGTACAGCCCCTAAAGAATTTTCccatgttttgaaaaaaatgctacTTGGAAAAACTATCAAACAAGTAATTTTAGTTTGTGTTCCACAAATGGAACTATTAGATGATGAATTCATTTGTGACAAATGTTATAGATTCCTTTTAAAGTTAATGGGGTTTATTGATAATTGTCTGGAGTCTGAAGAACAGCTAGGCACAGGAAAAATTTCTCTGAATGTTGATAGCAGTGACATTGCAGATATCAACAAAACTGCTTACCGTTCGTTTTCCAAAAAGAAGGGAAGACCAAGAAAAAATGATGATGAAAAAGAAGATGAAAATACGGAAGTGCCAGTTGGTGTTAAGTGGGGCATACCGAATACTGATGGCAAAACAATCATAGTAAGGAGGTACGGAAAGCCAAAAACATCTGATAATCAACTAATAACAAATGATGAATTTATAAACACAACAATAACTGATACAAATGGTGAATCAAATAACAGACTAAACAATTCTATCAATACTATTGAAAATATAGAAAGTCATGATGAAACTGAAATGTTTATAGAACACACAGTATCTACTGAAGAAACTGATTCAACTTCAAAAGATTGTATATTATCTGAAATATCACCAAAAGAAAGCGGAAGCAGTTCGAAATTTATACATGCTGATCATTCTTACGTTCCAGAAGATTTAGTAAAATTATTAAGATGTCCACATTGCATGACAGATTATAGAACTCTTAGAGGTATTAAATTGCATTTGACCACAGCACACAAAATTTCAGAAGAACAATCTTTTAAATGCAGTTTGTGTAATATGAAATTTATTCGATATAAAGATATGGTTAAACATAAAAGCATCCACGGCTATGCTTGTGAATTATGTGAAGATTTctttcccaCTGTTGTAGAACTTGATTCACATAGGTCTGTTCATCCGGAAAAATACTGTTGCGTGAAATGTGGAgcgacatttcaaaaaaaactcCTCTTAGAGAAACACGTGCCTTTGCATCAAATGATGTCAAGAATCcgtgtattaataaaaaatatgggaAAATCTGAGTTGCAGTGTCCCCATTGCAGTCTCAAGTGTGGTTATGCCAGTGCTCTCCAGCAGCACATAAAGACCGTACATCTTAAAATCAAGGATTTTGAATGTGGAGCATGTCATAAAAAGTTCAGCACTAGCAATTCTTTAAAAGTACATGTCAGAGTTCGTCATTCAACAGACACACCATTCGTTTGCCAGGAATGCGGTGTGGGATACGGACGTTTGGATTATTTGCAAAGGCatgaacaaattcattattctaaaaataatcCTTTCATAAATCCTGCAAAGAGAAATTACAGCAAAGTATCAAATAATACAGattcATTTGCTTGCATATTTTGTTCTGTTAAAACATCTTCGAAAGAAGAATTACTTGTTCACTTAAAAATCCATAATAGTTTGAGGAAGTATGAGTGCGATTATTGTGGATTAATACTTAGTTGTCATCGTACGAAAATGTCCCATGAGAATACTCATAAAAATTCAGATCCCATATATATATGTACTACTTGTTGGAAAAAATTCCCAACCGAACAAGAATTGAAAACGCATACAGACCTCCATGAATGTGTGGCAAATAAATTCACTTGTAATATTTGCAATGCTACCTATGCAAGACAAATACTGTTAGAATCGCACATTTTATATGAACATgtagaaaatatagaaaaagaaATAGAATCATTCGATGATAATCATTCCTCCCTTGATGTAGTAGAAGTTAACAGAAGAAACATCGAAGTTGAGTGGAGCACCGACGAGGAAGATGAAGAATCGGAAAACGATCATTTGAATGGAGAAGTAATAAAGGCAACGaaactaattattttaaaaaaagaggtCATAGAAGCGGAAAAAGCGAATGAAAAAGAAGGGAAAGAAGAATATATACTTGGGATGGATGAAGATCCTAGTATGGAAGAAGCAATAGATAACGGTaatttaaaaactgaaataGAACCTCAAGATGATACGGAGGATGAGAAAACTAATCAAGAAGACTTGGAAttgaataaagaaaatgaatgcGTAATTATAGACGAACAAAAAACTAAGCAGGTCAGTTTGAATGAACTAAACGAAAGTAATCACAAACataaagaaaatgaagaatCCAAGGGAGAAAGCAGCCCTCACGACGAAAGTAAGAGTCTGGAAGAACGCAAGAAAGAAACTACACAGTCAGAAAGTGAACGTTCACTTAATTTAGAGGTAGTATCAGAAGATTAG
Protein Sequence
MPACCVSYCNNRTEKGIRLFMLPQGDRNKERRDAWIKNIKREDLSSKAHVCEIHFEYDQFENHREDGKRTLKNSALPTLFSKEHLQKELMEDNTRSTRRSTRKRKPVVFEEYQSEDEDLEGSRSKSIKTETEETSDEKVTEPLKKIELIRCRTCLSTAPKEFSHVLKKMLLGKTIKQVILVCVPQMELLDDEFICDKCYRFLLKLMGFIDNCLESEEQLGTGKISLNVDSSDIADINKTAYRSFSKKKGRPRKNDDEKEDENTEVPVGVKWGIPNTDGKTIIVRRYGKPKTSDNQLITNDEFINTTITDTNGESNNRLNNSINTIENIESHDETEMFIEHTVSTEETDSTSKDCILSEISPKESGSSSKFIHADHSYVPEDLVKLLRCPHCMTDYRTLRGIKLHLTTAHKISEEQSFKCSLCNMKFIRYKDMVKHKSIHGYACELCEDFFPTVVELDSHRSVHPEKYCCVKCGATFQKKLLLEKHVPLHQMMSRIRVLIKNMGKSELQCPHCSLKCGYASALQQHIKTVHLKIKDFECGACHKKFSTSNSLKVHVRVRHSTDTPFVCQECGVGYGRLDYLQRHEQIHYSKNNPFINPAKRNYSKVSNNTDSFACIFCSVKTSSKEELLVHLKIHNSLRKYECDYCGLILSCHRTKMSHENTHKNSDPIYICTTCWKKFPTEQELKTHTDLHECVANKFTCNICNATYARQILLESHILYEHVENIEKEIESFDDNHSSLDVVEVNRRNIEVEWSTDEEDEESENDHLNGEVIKATKLIILKKEVIEAEKANEKEGKEEYILGMDEDPSMEEAIDNGNLKTEIEPQDDTEDEKTNQEDLELNKENECVIIDEQKTKQVSLNELNESNHKHKENEESKGESSPHDESKSLEERKKETTQSESERSLNLEVVSED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00910841;
90% Identity
iTF_00910841;
80% Identity
iTF_00910841;