Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421396.1:23077846-23081476[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.027 5.6 9.2 1.9 1 23 315 337 315 337 0.92

2 12 0.049 10 8.4 0.8 1 22 339 360 339 360 0.92

3 12 9.4e-06 0.0019 20.1 0.9 3 23 435 455 434 455 0.99

4 12 0.00032 0.065 15.3 0.2 1 23 461 483 461 483 0.97

5 12 0.00028 0.057 15.5 1.4 2 23 490 511 489 511 0.97

6 12 8.2e-06 0.0017 20.3 1.6 1 23 517 539 517 539 0.98

7 12 0.0013 0.26 13.4 1.0 1 23 545 567 545 567 0.96

8 12 7.9e-08 1.6e-05 26.7 1.0 1 23 575 597 575 597 0.98

9 12 0.00031 0.064 15.4 0.2 1 23 603 625 603 625 0.97

10 12 2.2e-05 0.0045 19.0 1.4 1 23 631 653 631 653 0.98

11 12 0.0014 0.29 13.3 0.5 1 23 659 681 659 681 0.97

12 12 1.3e-05 0.0026 19.7 0.7 1 23 687 709 687 709 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.027	5.6	9.2	1.9	1	23	315	337	315	337	0.92
2	12	0.049	10	8.4	0.8	1	22	339	360	339	360	0.92
3	12	9.4e-06	0.0019	20.1	0.9	3	23	435	455	434	455	0.99
4	12	0.00032	0.065	15.3	0.2	1	23	461	483	461	483	0.97
5	12	0.00028	0.057	15.5	1.4	2	23	490	511	489	511	0.97
6	12	8.2e-06	0.0017	20.3	1.6	1	23	517	539	517	539	0.98
7	12	0.0013	0.26	13.4	1.0	1	23	545	567	545	567	0.96
8	12	7.9e-08	1.6e-05	26.7	1.0	1	23	575	597	575	597	0.98
9	12	0.00031	0.064	15.4	0.2	1	23	603	625	603	625	0.97
10	12	2.2e-05	0.0045	19.0	1.4	1	23	631	653	631	653	0.98
11	12	0.0014	0.29	13.3	0.5	1	23	659	681	659	681	0.97
12	12	1.3e-05	0.0026	19.7	0.7	1	23	687	709	687	709	0.98

Sequence Information

Coding Sequence: ATGACTTCCATGGAAAATCCTAAATATGAAGAATTATGCAGACTTTGTGCTACTAAAACTGAGGTGTTTTTGGgcataaatatatttgaacatgAGGGTACAGCTCGACAATTGAGTAAAAAGATAGATTCCTGCCTGCCTGTACAGGTTCATGAGGCAGATGAACTGCCCAAGATGATCTGTGATGCCTGCCTGTATAAGTTGGAATTATTTACTGATTTTCGGGAACGTTCCATTCGTACAGAAAAACTATTAGTAGAATTATATAAAGAATTATCCAACTGTATAGAAAATGGCCAACAACCATGTATAGTTCCTATAAATAGTAATGAACTGATAATGGTACATCATTTACAGAACATCTCTGACATGGAACTGCCTTCTCTATCACATAACCAAGAAATAATTATGACACCTGATGTGAATTCCCATTCTTTAGAGAGTATTGTGAGCAATAGTCTAAGTAACACTGATTTTTCTAATCAAACTTTTAATGCACAGGAGGCTGCTTTGGCAGATTCAAACTCGGATTctaaatttgaagataatttgactCTAATACAACAACATCAATTATTGACTGATCAGTTTAGGCTGCAACAAGACTTACAACTTGAAAGTGCCACTATTCCATTACTAAATGATTTTAAAGATACATCAAATCATCCAATGCACAGATATGATTTGCAAGTTAAATTAGAAGAAAACAACATTAGATTACAGTTTGAAGAAGGGAAAGATTTATTGAATCAAATATCTGTTAAAACAGATAGTGAATCATATAGGCAAGATGATAGTTCTAGTAATAGCATGAATTCCTTACACATAGaaaaacaactaaataaaattaatcaagaaaATTCCTTAAGTGATAAACACATATTTGATCTGAACACCACTAGTAGTGATTCTCTTCTAGTTATGGGTAATGACATAGATAATTTCTTCTGTAATGTATGTAGTAAAATTTTTGATCACAGAGATGATTTTGATTTGCATTCCTTGGAGCATTTTCACAAGTGTGGGGGATGTAAGACTGTTTTCACTAGCATGGAAATTCTCAATAATCATAAGAAGACTTGCAATGTACAAGAAAAATTTGTAAATTCTGCAGTTAAATTGCCCATTAAAGTAAAAACTACTGATTGGACAAGTGAAGAGAGTGAAAATgaaagagaaataaataatttggaaGAGGAAGACAATATTGAAGAAACTGATCATAAGAACAAATCAAGTAACAGTAACAACAATGCTGTACAAAGCATTGAAAAAAGGCGACAAAAAAGTGGTGATAAAcTTTGCAAGGTGTGTGgaaaaatgtattcaacaaaCTATAAATTGGGAGAACATATGCGTAAACATACAGGGGAAAAGCCATTTAAATGTGGATCATGTGATAAAGCTTTTAGATCAAGAATTGGGTTAGCACAACATGAAGCTAAACATACAGgTAACTATGAGCTGTCTTGTCCAACATGTGGCAAAGGGTTTCAATGTAAGAGTTATTTAATGGTACACCAGAGAGTTCATTCTAATATTAAGCCTTTTCCTTGTACAACATGTGGGCAAAGTTTTAAAACGAAACAGTCACTTTTAGATCACACAAATAGACACTTAGGTGTTAAACCTCATATCTGTGATATTTGCGGAAAAGGATTCATCACACCGGgTCTTTGTAGAGCACATAAAAAGATTCACTCTGGTCAAGATAACCGCAAATATTCATGTGATGTATGTGACAAaatgtttgtttcaaaaagCTATCTACAAACACATCAACGTATTCATACTGGTGAGAAACCATTCATGTGTGAAGTCTGCGGAAAAGGTTTTTTGACACgtgtcgatttgaaaattcatttaaCAATGCATACTGGAGAAAAATCTTTCGTCTGTGAGATGTGCGGGAAAGCGTTTGCTAGAAGAGATGCATTGAGATGTCATAGGAGGTCACATACAGGAGAAAGGCCCTATAGTTGTGATTTATGTGGACAAACTTTCACTCAATTTACACCAATGGCGATTCACAAACGATTGCATACTGGAGAACGTCCGTACTCGTGTGAAACTTGTGGGAAAGCTTTTGTATCAAGGTCTACGATGATgtctcatgccaaaaaacatgTGTGA
Protein Sequence: MTSMENPKYEELCRLCATKTEVFLGINIFEHEGTARQLSKKIDSCLPVQVHEADELPKMICDACLYKLELFTDFRERSIRTEKLLVELYKELSNCIENGQQPCIVPINSNELIMVHHLQNISDMELPSLSHNQEIIMTPDVNSHSLESIVSNSLSNTDFSNQTFNAQEAALADSNSDSKFEDNLTLIQQHQLLTDQFRLQQDLQLESATIPLLNDFKDTSNHPMHRYDLQVKLEENNIRLQFEEGKDLLNQISVKTDSESYRQDDSSSNSMNSLHIEKQLNKINQENSLSDKHIFDLNTTSSDSLLVMGNDIDNFFCNVCSKIFDHRDDFDLHSLEHFHKCGGCKTVFTSMEILNNHKKTCNVQEKFVNSAVKLPIKVKTTDWTSEESENEREINNLEEEDNIEETDHKNKSSNSNNNAVQSIEKRRQKSGDKLCKVCGKMYSTNYKLGEHMRKHTGEKPFKCGSCDKAFRSRIGLAQHEAKHTGNYELSCPTCGKGFQCKSYLMVHQRVHSNIKPFPCTTCGQSFKTKQSLLDHTNRHLGVKPHICDICGKGFITPGLCRAHKKIHSGQDNRKYSCDVCDKMFVSKSYLQTHQRIHTGEKPFMCEVCGKGFLTRVDLKIHLTMHTGEKSFVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYSCETCGKAFVSRSTMMSHAKKHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01106617;
90% Identity: iTF_00736044; iTF_00912443;
80% Identity: -