Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421404.1:18138860-18140562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0017 0.35 13.0 0.5 3 23 53 73 52 73 0.98

2 17 0.061 13 8.1 3.7 1 23 77 99 77 99 0.98

3 17 0.00033 0.067 15.3 1.7 1 23 105 127 105 127 0.99

4 17 6.6e-06 0.0014 20.6 0.2 1 23 133 155 133 155 0.95

5 17 3.6e-06 0.00074 21.4 0.2 1 23 161 184 161 184 0.98

6 17 6.9e-05 0.014 17.4 2.1 1 23 190 212 190 212 0.95

7 17 0.0073 1.5 11.1 0.1 2 23 219 240 218 240 0.96

8 17 1.9 3.9e+02 3.4 0.4 3 23 249 269 248 269 0.82

9 17 0.023 4.7 9.5 1.8 3 23 274 294 273 294 0.96

10 17 1.2e-06 0.00026 22.9 0.3 1 23 302 324 302 324 0.98

11 17 3.8e-05 0.0079 18.2 1.5 1 23 331 353 331 353 0.98

12 17 0.00017 0.036 16.2 0.9 1 20 359 378 359 381 0.92

13 17 0.00052 0.11 14.6 4.9 1 23 387 409 387 409 0.97

14 17 7.7e-05 0.016 17.3 0.8 3 23 417 438 415 438 0.97

15 17 5.5 1.1e+03 2.0 1.3 2 19 444 461 444 461 0.83

16 17 6.7 1.4e+03 1.7 9.9 3 23 476 496 475 496 0.97

17 17 0.00033 0.067 15.3 1.5 1 23 502 524 502 524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0017	0.35	13.0	0.5	3	23	53	73	52	73	0.98
2	17	0.061	13	8.1	3.7	1	23	77	99	77	99	0.98
3	17	0.00033	0.067	15.3	1.7	1	23	105	127	105	127	0.99
4	17	6.6e-06	0.0014	20.6	0.2	1	23	133	155	133	155	0.95
5	17	3.6e-06	0.00074	21.4	0.2	1	23	161	184	161	184	0.98
6	17	6.9e-05	0.014	17.4	2.1	1	23	190	212	190	212	0.95
7	17	0.0073	1.5	11.1	0.1	2	23	219	240	218	240	0.96
8	17	1.9	3.9e+02	3.4	0.4	3	23	249	269	248	269	0.82
9	17	0.023	4.7	9.5	1.8	3	23	274	294	273	294	0.96
10	17	1.2e-06	0.00026	22.9	0.3	1	23	302	324	302	324	0.98
11	17	3.8e-05	0.0079	18.2	1.5	1	23	331	353	331	353	0.98
12	17	0.00017	0.036	16.2	0.9	1	20	359	378	359	381	0.92
13	17	0.00052	0.11	14.6	4.9	1	23	387	409	387	409	0.97
14	17	7.7e-05	0.016	17.3	0.8	3	23	417	438	415	438	0.97
15	17	5.5	1.1e+03	2.0	1.3	2	19	444	461	444	461	0.83
16	17	6.7	1.4e+03	1.7	9.9	3	23	476	496	475	496	0.97
17	17	0.00033	0.067	15.3	1.5	1	23	502	524	502	524	0.98

Sequence Information

Coding Sequence: ATGGAAACAAAGCCTTTCCCAatagaagaaattaaaattaaagaagAGCCGACTGATTGTTATACTGGTACATATTGGAATGAAAATAGTTCTTGTGACCAGGTTTTAAAAGTTGAAATTATAGAACCCCATACTATTAATTCTAGAGACCTTCTATGTAAACAATGCGATGCTGTGTTTGTGAACGATCATGAATTAACAGTTCATAAAATGATCCATTCAACAGATCATACTTGTTTTATTTGTAAggaatttgttaaaaataaattccaatTTGTGGGACACGTGAGAAAACATATGTGCGCGAAGCCTTTCAAATGCTCTTCATGTGAAAGAACCTTTCCCAGCTCAAGGGAGACCAAATTACATCAAAGGGTACATAGTGACGATAGACCATATATGTGTACCGAATGTGGAAAAGCGTTTAAACAAATTTCTACACTTAAAGATCATGAAGTTGTACATACTGGAGAGAAAAAATTTAAGTGTAAGATTTGTGAAGGTGCTTTTGCAACAGCAACAAGTCTAAGACGTCACATACGAGTAATGCATGAAACACTTCGATCTTTCTTATGTCATTTTTGTAAAGAAAGTTTTACAAGCCAACAAGCTTTAAAACAACACTTGGCAATTCATAAAGACATTGAGCCATTGACATGTAATGTCTGTGGAGTAGAATTAACAAATTTAGAGCAATTTATTATACATAGAAACCAACATGTTGAACAAAAATCTTCTGGGATCTGTGAATACTGTggtaataaaacattttattttggtttgaagGATCATATTGAGAAGGTTCATCAGCCCAGGTGTTGTGATATCTGCAATTTAGttttttatgatgaaaaatcGATTGAAAACCATAAGAAAAATCATCTAGAAGAATCAAAAGAAGACTATGCATGTCTAGTGTGTGGTAAAGTTTTTGAATTTCCTCGCTATTTAAAAGCTCACATGAAACGTCATGAAACggattataaaaaattcaaatgtgatttatgtttaaaattattttcttcaaaaagaGATCTTAAAAATCACTTAAATGTTCATGCCAATGTCAAAAATTACTTCTGTAAAATCTGCAATAAGGCTTTTAGAACACAACAAAGTGTAAGTAAACATTTGCCTATACATTCAGAGAAAAGACCCTTCAAATGTACCCAATGTGacaaaagatttaaaaaacaatCCATATTGAGAAAACATAGTTTTACTCATTCTAAAATTCGAGCTTTTGGTTGTGATTTATGTGATAAAAACTATAAAACTAAAGAATCTTTGAGAGTACACAAATTAACGCTGCAtcagaaaaaaagaagaaaatgcaAAATGTGtaaaaattcatttgaatttgACTCTGTTTACAAAAATCATGATTGTTTTAGTAGATATAAATTTGACATTACCAAACGTCATTGTAATTTCTGTAAGAGATTTTGTAAAACTGCCATTACATACATTCATCATTTTAGAAAACATATAAGGGAAAAACTATTCGAATGTGATATATGCAAAGAAAAGTTTAAATATCAATACCAAATTAAATTACATGAAAATAGTCATAAAAGTTGA
Protein Sequence: METKPFPIEEIKIKEEPTDCYTGTYWNENSSCDQVLKVEIIEPHTINSRDLLCKQCDAVFVNDHELTVHKMIHSTDHTCFICKEFVKNKFQFVGHVRKHMCAKPFKCSSCERTFPSSRETKLHQRVHSDDRPYMCTECGKAFKQISTLKDHEVVHTGEKKFKCKICEGAFATATSLRRHIRVMHETLRSFLCHFCKESFTSQQALKQHLAIHKDIEPLTCNVCGVELTNLEQFIIHRNQHVEQKSSGICEYCGNKTFYFGLKDHIEKVHQPRCCDICNLVFYDEKSIENHKKNHLEESKEDYACLVCGKVFEFPRYLKAHMKRHETDYKKFKCDLCLKLFSSKRDLKNHLNVHANVKNYFCKICNKAFRTQQSVSKHLPIHSEKRPFKCTQCDKRFKKQSILRKHSFTHSKIRAFGCDLCDKNYKTKESLRVHKLTLHQKKRRKCKMCKNSFEFDSVYKNHDCFSRYKFDITKRHCNFCKRFCKTAITYIHHFRKHIREKLFECDICKEKFKYQYQIKLHENSHKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912442;
90% Identity: iTF_00736039;
80% Identity: -