Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421400.1:5313537-5317700[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.4e-06 0.0015 20.5 0.6 1 23 182 204 182 204 0.99

2 12 5.5e-05 0.011 17.7 0.8 1 23 210 232 210 232 0.98

3 12 7e-06 0.0014 20.5 3.2 1 23 238 260 238 260 0.98

4 12 0.00014 0.029 16.4 1.4 3 23 274 294 272 294 0.95

5 12 1.6e-05 0.0033 19.4 0.2 2 23 301 322 300 322 0.97

6 12 2.5e-06 0.00051 22.0 0.9 1 23 328 350 328 350 0.98

7 12 6.9e-07 0.00014 23.7 0.5 1 23 356 378 356 378 0.99

8 12 2.3e-05 0.0047 18.9 0.3 1 23 384 406 384 406 0.97

9 12 7e-07 0.00014 23.7 2.2 1 23 412 434 412 434 0.98

10 12 2.5e-06 0.0005 22.0 0.9 1 23 440 462 440 462 0.98

11 12 7.3e-07 0.00015 23.6 1.8 1 23 468 490 468 490 0.96

12 12 2.1e-06 0.00043 22.2 3.7 1 23 496 518 496 518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.4e-06	0.0015	20.5	0.6	1	23	182	204	182	204	0.99
2	12	5.5e-05	0.011	17.7	0.8	1	23	210	232	210	232	0.98
3	12	7e-06	0.0014	20.5	3.2	1	23	238	260	238	260	0.98
4	12	0.00014	0.029	16.4	1.4	3	23	274	294	272	294	0.95
5	12	1.6e-05	0.0033	19.4	0.2	2	23	301	322	300	322	0.97
6	12	2.5e-06	0.00051	22.0	0.9	1	23	328	350	328	350	0.98
7	12	6.9e-07	0.00014	23.7	0.5	1	23	356	378	356	378	0.99
8	12	2.3e-05	0.0047	18.9	0.3	1	23	384	406	384	406	0.97
9	12	7e-07	0.00014	23.7	2.2	1	23	412	434	412	434	0.98
10	12	2.5e-06	0.0005	22.0	0.9	1	23	440	462	440	462	0.98
11	12	7.3e-07	0.00015	23.6	1.8	1	23	468	490	468	490	0.96
12	12	2.1e-06	0.00043	22.2	3.7	1	23	496	518	496	518	0.98

Sequence Information

Coding Sequence: ATGGATATGAAAATGTATTTGACTGCTCCCCTGCAGGTAGACAAAATTTGTCGGGCATGTTTATCAGAAAAAGGGGACATGAGACCATTATTTGGAGCATGTTTGGATGAAATGTTAAACTCATTTGCGTCTATCCAGGTTGCTGAAAATGATGGATTCCCAAATCTTATGTGTGTACAATGTGTACTGCAATGTAGCCGAGCATATACTTTCAAACAACAATGTGAAAAATCTGATAATATTCTAAGGCAATATCTCTCTTCAGAATTTCAGCAACAACTGGCCGATACAATTGCTGAAAGACAAAGAGAACAAGCTAAGCAGGAGCTGCAAGAGCAGCTGCAGTTTTCCGATGATATAGGTACTGTTATAATTGAACAAGAAATTCCAGAGTTTGTTACATATACTGAAGATCAATTAGATGTAAAAGATGAATTATATACCATAGAAGCTACTACTGTAGCAGAAGCAGATACTGAGGAACTTGGTGATGAAATTGTACTACAACTTGAACCCAAACAAACAGAAGACAATAGATTCAAATACACCTGTACTAAATGTGAACAATCGTTTGCCCTGAAAGTTGATCTTAAGGTTCACATGATGTCTCATCCGAAAGATCTCGATTATGAATGCCATATTTGTGAAAAAGCTTTTAGTGAAGCTAGAATACTGAAAcgacatcttaaaattcatctAGAACAAAAACCTCATCAATGTGATCAGTGTGATATGTCTTTTGCTGAAAGTTCCAATTTAACTAAACACAAGAAAAAACATACTGGGGAATTGAGGAATATTAAAGGAAAGCCGCATTTGTGTTCTGTATGTGGCAGAGCTTTTAAATGGGCTTCCAGTTTATCTAAACATATGAAGTATCATACTGGGCATAAATTACTTTCCTGTGAATACTGTGGAAAACAGTATGTTGAGgcTAGAAGTTTAAGAATTCACATTAGATCTCATACAGGCGAACGTCCTTATGTTTGTGAAGTCTGTGAAAAAGGATTTACTCAAATTTGTAATTTAGAAAAACATCTTCGGGTACATACTGGAGAAAAACCATTCCAGTGTCCTGTTTGTAATAAAAGattTACTCAATCAGGTTATGTTGGCATCCACATGCGTACCCATACGGGAGCCCGACCGTACGTATGCGGTACGTGCGGCAAAGCTTTCGCCGGCTCGAGTACTCTTAACATTCACAAACACGTGCATACTGGAGAAAAACCATACGTTTGTCAAATTTGCAATAAGTCATTTAGCAGACACGAAACATTGATCATCCACACTAGATCACATACCGGAGAAAAACCCCACGTCTGTCAAGTCTGCAATAAAGGTTTTACCAGTTCGGGATTATTATCTGGACATATGAGAACTCATACTGGCGAGAAACCGCACGCTTGTGATAGTTGCGATAAAAAATTTGCGAGTTCTAGTAGTCTAAAAGTCCATATGAGATCTCATACCGGAGACAAGCCGTACACATGTAAAGTATGTAACAAAAGTTACTCGCACTCCAATACTCTTCAACAGCACATGGTTACACATAGTCTTAAAAGTGAAATGAAATTGGAAACTGTTCACGTAACTTTACCCGATATAATAACTGTCGACAACCAGACGATCCAAGTGCAGGCCATCtcttcaatttaa
Protein Sequence: MDMKMYLTAPLQVDKICRACLSEKGDMRPLFGACLDEMLNSFASIQVAENDGFPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSSEFQQQLADTIAERQREQAKQELQEQLQFSDDIGTVIIEQEIPEFVTYTEDQLDVKDELYTIEATTVAEADTEELGDEIVLQLEPKQTEDNRFKYTCTKCEQSFALKVDLKVHMMSHPKDLDYECHICEKAFSEARILKRHLKIHLEQKPHQCDQCDMSFAESSNLTKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCGKQYVEARSLRIHIRSHTGERPYVCEVCEKGFTQICNLEKHLRVHTGEKPFQCPVCNKRFTQSGYVGIHMRTHTGARPYVCGTCGKAFAGSSTLNIHKHVHTGEKPYVCQICNKSFSRHETLIIHTRSHTGEKPHVCQVCNKGFTSSGLLSGHMRTHTGEKPHACDSCDKKFASSSSLKVHMRSHTGDKPYTCKVCNKSYSHSNTLQQHMVTHSLKSEMKLETVHVTLPDIITVDNQTIQVQAISSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912434;
90% Identity: iTF_00912434;
80% Identity: -