Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421404.1:26312650-26316815[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00037 0.075 15.1 0.3 2 23 16 38 16 38 0.96

2 17 0.015 3 10.1 0.1 1 23 44 67 44 67 0.95

3 17 0.29 60 6.0 0.8 1 14 72 85 72 94 0.82

4 17 0.00013 0.026 16.6 0.7 1 23 103 125 103 125 0.99

5 17 1.1e-07 2.2e-05 26.2 0.5 1 23 132 154 132 154 0.99

6 17 1.3e-07 2.7e-05 26.0 0.8 1 23 160 182 160 182 0.98

7 17 9e-07 0.00018 23.3 0.6 1 23 188 210 188 210 0.98

8 17 5.7e-07 0.00012 24.0 1.0 1 23 245 267 245 267 0.98

9 17 0.00071 0.15 14.2 3.1 1 23 272 295 272 295 0.92

10 17 0.37 76 5.7 3.8 2 23 302 324 299 324 0.86

11 17 0.00011 0.023 16.8 0.4 3 23 332 353 330 353 0.93

12 17 1.3e-05 0.0026 19.7 7.2 1 23 358 380 358 380 0.99

13 17 0.016 3.3 10.0 1.0 1 23 389 410 389 410 0.93

14 17 2.5e-06 0.00051 22.0 0.3 2 23 419 440 418 440 0.97

15 17 4.6e-06 0.00094 21.1 0.5 1 23 446 468 446 468 0.99

16 17 9.3e-06 0.0019 20.2 1.3 1 23 474 496 474 496 0.98

17 17 0.0024 0.49 12.6 6.2 1 21 502 522 502 523 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00037	0.075	15.1	0.3	2	23	16	38	16	38	0.96
2	17	0.015	3	10.1	0.1	1	23	44	67	44	67	0.95
3	17	0.29	60	6.0	0.8	1	14	72	85	72	94	0.82
4	17	0.00013	0.026	16.6	0.7	1	23	103	125	103	125	0.99
5	17	1.1e-07	2.2e-05	26.2	0.5	1	23	132	154	132	154	0.99
6	17	1.3e-07	2.7e-05	26.0	0.8	1	23	160	182	160	182	0.98
7	17	9e-07	0.00018	23.3	0.6	1	23	188	210	188	210	0.98
8	17	5.7e-07	0.00012	24.0	1.0	1	23	245	267	245	267	0.98
9	17	0.00071	0.15	14.2	3.1	1	23	272	295	272	295	0.92
10	17	0.37	76	5.7	3.8	2	23	302	324	299	324	0.86
11	17	0.00011	0.023	16.8	0.4	3	23	332	353	330	353	0.93
12	17	1.3e-05	0.0026	19.7	7.2	1	23	358	380	358	380	0.99
13	17	0.016	3.3	10.0	1.0	1	23	389	410	389	410	0.93
14	17	2.5e-06	0.00051	22.0	0.3	2	23	419	440	418	440	0.97
15	17	4.6e-06	0.00094	21.1	0.5	1	23	446	468	446	468	0.99
16	17	9.3e-06	0.0019	20.2	1.3	1	23	474	496	474	496	0.98
17	17	0.0024	0.49	12.6	6.2	1	21	502	522	502	523	0.92

Sequence Information

Coding Sequence: ATGCTGAGGCACAAACAATCGGTTCATTTAGCGGATTACACCAATCGGTGCGATTTGTGCGACGCTGCCTTCAAAACACCCTTAACCCTTAAGCAACATCAACAAAACGTACATTTCAAGAATTATAATTTCGCTTGCGAAATATGCGGACGGGGgtattttttgaagaaaatgttGGATCTGCACGTTAAAGTAGAACACGAAGATGTTAGATTCAATTGCGAGTTTTGTCAAAAACCTTTTAAAACCGTACAAGGTCTGGATTTCCATAAAGTTGTTCACGATCCGAATCATAAGAGAAAAGAATTTACTTGTAAAGTATGTCTGGCTGTTTACACTTCTAGGTCAACATATATAGTTCATATAAGGAAGCATAAGGTTGGAGATGAAAACTACGTTTGTGATATTTGCGGAAAATCCGTTACAAAGAAAGCTAGTCTTAAAAATCACCTAAGAACCCATACCGGGGAACGACCATTCGTTTGTAAAGACTGCGGAAGAGCCTTCAGCACCAACAACCTACTTAGAACTCATACGAGAATCCACACCAACGAAAAACCGTACATATGTTCCATTTGTAAAAAAGGATTCAGACAACGACCTGCCTTGAAAATACACATGAGATACCACACCGGGGAAAAACCTTATTTATGTGTCATGTGCTCCAAgttaGACGAAAAACCTTTAATAGACTATACAGCTGTGCTACACTGCCAAGTAGATTACCGAGGCTTCACTTGCGAAATATGCCAAAAAAATTTCGCCTCCATATCGAATCTACGAAGACACAGAATAACCCACCAAGAAAAAACGTTTGCGTGCGATATGTGCCcgaaaatattccaccaaaagtaCAACCTCGAGTATCACAAAAACTTTAAGCATTTTCGAAAATTTACGTGTAAATGTTACTATTGCGATCAAGTTTGTTTAAACAAAAACGGTTTAAAGTTGCATATCGACAACGTACACTTGAATAAGTATAAATTCGGTTGTGAAAAATGTCCTAAAGGGTACAATTCGAAGAGTGAGTTGGAGAAACACGTTCAATTCGACCACGAAGGTCTAAGATACAAATGTTTAGTCTGCGATAAACATTTTAAAGATAATAATCATTTTAAGCAGCACATCAAAACACACGATCCGAATTACACTAAACCCGAGTTTACTTGCTTGGTTTGCGGGAAGATTCTTTCAACAAAATCGTACGATCGACATATGAAAATGCACCAAGGAAATGTTGGTAATAACGTCGTATGTGATATTTGTGGTGTGGTAGTGTCGAGTAAAAGTCACTTGATCAACCACAGGCGTACACATACAGGGGAAAAACCTTACGAATGTGATTTTTGTGAAAAACGTTTCGCCAGAAGTGAAACTTTAGCAGATCATCGAAGGGTTCATACCAAAGAAAGACCATATATTTGTTCGGTTTGTTGTAAGGGCTTTACGCAAAAGTCTGCACTTAATGTTCACATGAGGATACACACTGGTGAAAAACCGCATTTTTGCGACGTCtgtcaaaaaaaattcacaacGAAACATCTATTGAGGAATCACAAGTGCATTGGACCTATCGTTGATGAAGAGACTGAAGATGATAAAAGTAAAACCGTTGTTACAGTTACTAGCTTATAA
Protein Sequence: MLRHKQSVHLADYTNRCDLCDAAFKTPLTLKQHQQNVHFKNYNFACEICGRGYFLKKMLDLHVKVEHEDVRFNCEFCQKPFKTVQGLDFHKVVHDPNHKRKEFTCKVCLAVYTSRSTYIVHIRKHKVGDENYVCDICGKSVTKKASLKNHLRTHTGERPFVCKDCGRAFSTNNLLRTHTRIHTNEKPYICSICKKGFRQRPALKIHMRYHTGEKPYLCVMCSKLDEKPLIDYTAVLHCQVDYRGFTCEICQKNFASISNLRRHRITHQEKTFACDMCPKIFHQKYNLEYHKNFKHFRKFTCKCYYCDQVCLNKNGLKLHIDNVHLNKYKFGCEKCPKGYNSKSELEKHVQFDHEGLRYKCLVCDKHFKDNNHFKQHIKTHDPNYTKPEFTCLVCGKILSTKSYDRHMKMHQGNVGNNVVCDICGVVVSSKSHLINHRRTHTGEKPYECDFCEKRFARSETLADHRRVHTKERPYICSVCCKGFTQKSALNVHMRIHTGEKPHFCDVCQKKFTTKHLLRNHKCIGPIVDEETEDDKSKTVVTVTSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459147; iTF_00736014;
90% Identity: iTF_00459147; iTF_00736014;
80% Identity: -