Lcap032223.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- Prdm2
- Assembly
- GCA_949126875.1
- Location
- OX421404.1:26261851-26271894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8.8e-06 0.0018 20.2 4.5 1 23 10 32 10 32 0.99 2 22 1.2e-05 0.0024 19.9 3.0 1 23 38 60 38 60 0.98 3 22 8.9e-06 0.0018 20.2 1.3 1 23 67 89 67 89 0.98 4 22 7.7e-05 0.016 17.3 1.5 3 23 97 118 95 118 0.96 5 22 2.2e-05 0.0044 19.0 1.5 1 23 124 146 124 146 0.97 6 22 8.9e-05 0.018 17.1 0.2 2 23 157 179 156 179 0.95 7 22 0.00023 0.048 15.7 0.5 1 23 187 210 187 210 0.94 8 22 2.1e-05 0.0044 19.0 3.0 1 23 216 238 216 238 0.98 9 22 6.9e-05 0.014 17.4 2.7 1 22 244 265 244 265 0.96 10 22 0.00015 0.031 16.3 2.0 2 23 289 310 288 310 0.96 11 22 1.9e-05 0.0039 19.2 1.2 1 23 316 338 316 338 0.97 12 22 0.0023 0.48 12.6 0.6 2 23 345 366 344 366 0.97 13 22 0.059 12 8.2 0.8 2 22 373 393 373 395 0.90 14 22 2.2e-05 0.0045 19.0 2.4 1 23 400 422 400 422 0.97 15 22 0.00081 0.17 14.1 0.1 1 23 430 453 430 453 0.91 16 22 0.00045 0.093 14.8 4.3 1 23 459 481 459 481 0.98 17 22 4e-05 0.0083 18.2 3.4 1 23 487 509 487 509 0.98 18 22 1e-05 0.0021 20.0 1.2 3 23 517 538 516 538 0.97 19 22 0.0018 0.37 12.9 0.3 1 20 554 573 554 576 0.93 20 22 0.096 20 7.5 0.7 1 23 582 605 582 605 0.97 21 22 1.5e-05 0.003 19.5 0.1 1 23 610 633 610 633 0.97 22 22 0.0005 0.1 14.7 0.5 3 23 661 682 659 682 0.96
Sequence Information
- Coding Sequence
- ATGAAACAAGAATCTGGCAAAAACGTATTCCAATGTAGAGAATGTCCGAAAGCTTTTACAACCAAACATTACTTCAAAAGCCATCTACTCACCCACATCGGCGTATTTCCATTCGAATGCGCCCAATGtcagaaaaaattcaaaagaaaacaAGATCTGAAAAGTCATACTCTAACCCACAACACCAACAGAAGCACTTTCACCTgtgaaatttgtaaaaaaatcctAACGACAAAATCTTCCTTACTAATCCATCAAAAACGACATTTGAAGTTatacaatattttctgtaaCTACTGCCAAAAAGGTTTCTACTCTAAAACAACTCTAACGTTACACATTAACTCCAAACACGAAGGCAAAACGACTTTCGTTTGTGACATCTGCGGTAGGTCTTGCTACGACAAAACGAGCTTGGAAAACCACAGAGCTAGACACGACGAAAGTTacggcaaagaaaaaaatatagagTGTCAACTATGTGGAACAAAATTTATAGATCAAAAGTATTTAGCCGTGCATATGTACAAGCTGCATAGCGAAGACCACAACCATAGATTCGTGTGCGAAAGCTGCGGTAAAAAACTTTGCTCCAAAGTAAGTTTACAAGAGCATATGATAGCAGTGCATCAAGGACTCAAGCCTCATAAGTGCGAGATTTGTAACCAGTCGTTCGCAAATCGTACTACGCTCAAATTGCACGAAAGGAGACACACCGGGGAACGTCCTTATAGGTGCACGTACTGTTTGAGAGCGTTCACTCAAAGTCATAGTCTTAAGATGCATCTAAGGAAGAAACAAAATCCATCCaatgagaaaaataaatattctaaaaGAAGTTATATAAAATCTAAACAACTCTTAAACTGCGATTTATGTaaaaaaactttcaaacaaTACAGTCGACTAAAACTCCACCTATTATCCCACAGTACAAACCGACCATTCTCCTGTGATCTGTGCGACAAAACTTTCAAGCGTAAAAACGACGTTTCGGTACATTTGAAACTTCACGGAAATAAAACAACGATCGAATGTGACATTTGCTCCAAAAAACTCGGTTCCAAAAGCTCTTTCGTGATACACAGGAAGCGCCATCTCAAAGAATACGTAGCTAAGTGCGAATTTTGTTTACAAGGCTTCGTCACCAATCAAGAATACAACAACCACATGGGTTTCAAACACGGCACCAGCAGCCACGTGTGTAATATTTGTGGCACCGCTTGCTACGACAAATCAGCTTTAACCAGCCACATGACAAGACACGATGATAATTACAATCATAAATTCGTGTGTGAAACTTGCGGAAAAAAGTTATACTCAAAAGTAACTTTACAAGAACATATAGTAGCCATTCACCAAGGACTGAAACCGCATAAATGCGATCAATGCAATCAGTCCTTTGCTAATAGGTTAACATTGAGGCTGCATAAAAGGAGACATACCGGTGAAAGGCCTTATAGCTGCACTTTCTGTTTGAAAGCGTTTACGCAGAGTCATAGTTTGAAAATTCATCTTAGATTGCACACCGGAGAGAAACCAGAGATTTGTAATATATGTGAAAATGCGTTTACTTCTAAAAGTATGTTGAAGTCTCATATGAAGACTAAACATAAGATTTACCCGGAAGACGACGAAGTTCAGTTCATCGAAAAAGAATATATGTGTACACAATGCGGTAAATACTTCATGTACAAATGGCAACTTGTAGATCACCTTCCCGTACACACCACCGACAGACCCTTCAAGTGCGATATTTGCGACAGCTGGTTCAAGCGCGTCAAAGATGTTACCATACATAAAAAACGCGTTCACGTAAAACCCCATTATGTTTGTGAAATTTGCCAGAAAGTTTTAAGTAGAAAGGCTAGCTTAGAAGAACATATTATCAAGGTTCACAATCAAATCAACCAAGGTACAGCTTATCCCAAAAATTTATTGCACAAAGATCTTATGAAGAAAGATATGATAAATATGAATTGTGAATTATGTGGCAGGGGATTTATTACCAAAAGAGTGTATAGAATTCATATGAAATCAACtcataatgttattattttagATGAATAA
- Protein Sequence
- MKQESGKNVFQCRECPKAFTTKHYFKSHLLTHIGVFPFECAQCQKKFKRKQDLKSHTLTHNTNRSTFTCEICKKILTTKSSLLIHQKRHLKLYNIFCNYCQKGFYSKTTLTLHINSKHEGKTTFVCDICGRSCYDKTSLENHRARHDESYGKEKNIECQLCGTKFIDQKYLAVHMYKLHSEDHNHRFVCESCGKKLCSKVSLQEHMIAVHQGLKPHKCEICNQSFANRTTLKLHERRHTGERPYRCTYCLRAFTQSHSLKMHLRKKQNPSNEKNKYSKRSYIKSKQLLNCDLCKKTFKQYSRLKLHLLSHSTNRPFSCDLCDKTFKRKNDVSVHLKLHGNKTTIECDICSKKLGSKSSFVIHRKRHLKEYVAKCEFCLQGFVTNQEYNNHMGFKHGTSSHVCNICGTACYDKSALTSHMTRHDDNYNHKFVCETCGKKLYSKVTLQEHIVAIHQGLKPHKCDQCNQSFANRLTLRLHKRRHTGERPYSCTFCLKAFTQSHSLKIHLRLHTGEKPEICNICENAFTSKSMLKSHMKTKHKIYPEDDEVQFIEKEYMCTQCGKYFMYKWQLVDHLPVHTTDRPFKCDICDSWFKRVKDVTIHKKRVHVKPHYVCEICQKVLSRKASLEEHIIKVHNQINQGTAYPKNLLHKDLMKKDMINMNCELCGRGFITKRVYRIHMKSTHNVIILDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -