Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421406.1:4339945-4348387[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.4e-13 6.5e-10 40.5 0.2 1 44 6 49 6 49 0.99

2 10 1e-12 1.2e-09 39.7 0.7 2 44 115 157 114 157 0.91

3 10 0.41 4.8e+02 2.5 0.0 14 44 165 192 159 192 0.75

4 10 1.4e-13 1.7e-10 42.4 5.0 2 44 245 287 244 287 0.96

5 10 4.9e-13 5.8e-10 40.7 1.4 1 44 343 386 343 386 0.98

6 10 1e-15 1.2e-12 49.3 4.2 3 44 435 476 433 476 0.97

7 10 4e-14 4.8e-11 44.1 3.0 1 44 531 574 531 574 0.98

8 10 0.43 5.2e+02 2.4 1.5 16 29 694 707 683 717 0.78

9 10 1.8 2.1e+03 0.4 2.2 15 38 786 809 769 818 0.78

10 10 0.81 9.6e+02 1.6 1.5 18 40 844 863 832 865 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.4e-13	6.5e-10	40.5	0.2	1	44	6	49	6	49	0.99
2	10	1e-12	1.2e-09	39.7	0.7	2	44	115	157	114	157	0.91
3	10	0.41	4.8e+02	2.5	0.0	14	44	165	192	159	192	0.75
4	10	1.4e-13	1.7e-10	42.4	5.0	2	44	245	287	244	287	0.96
5	10	4.9e-13	5.8e-10	40.7	1.4	1	44	343	386	343	386	0.98
6	10	1e-15	1.2e-12	49.3	4.2	3	44	435	476	433	476	0.97
7	10	4e-14	4.8e-11	44.1	3.0	1	44	531	574	531	574	0.98
8	10	0.43	5.2e+02	2.4	1.5	16	29	694	707	683	717	0.78
9	10	1.8	2.1e+03	0.4	2.2	15	38	786	809	769	818	0.78
10	10	0.81	9.6e+02	1.6	1.5	18	40	844	863	832	865	0.85

Sequence Information

Coding Sequence: atgtctaCTCGGAGATCACCTGTTTGGAATGTTTTTACCGAATCCAAGGAAAATAAAGGTATAGCTATTTGCAACATTTGCTCTCAAGAGTTTTCTTTTAGAACCACAACTACAAATTTATTGAAGCATGTTCAGAGAAAGCATcctgaaattaatataatattgaatacATCCATTCATATTGAAGCCCAAAAAAGCATAGGATTACCCGAACTATTGCCAAAAggaattgaaattataattgaaGATGAATGTGATGGCAATCAACCTAAAGAAGAACCTGAATCCTTCACTGAGGATAATAGTAATTCAACTGTAGAtcgttattataaaaatgtttcaagcaTGTGGctacatttcacaaaaatagaAACATCAAGTGGTTTTTCAGCAGTTTGCAATGTTTGTGACAAGGAGATTTCTTATAAGACAACCTCAAATCttaaaaaacatttagaaaGAATACATCCTGAGTACTTAGAAGGTTCCGAGGAAACATCAATGAAATGTCAATTTTGCCTAGAAAATTTTATATCTGAAACTGACTTACAAATACATATACAAAAGTATCACCCTGTACAACTGCCCAATAAAATACAGAGAAGTGAAAAAAGAAGTTCTGTATCAGGTAGTGATAAAGAGTCTTTAGATAGTGAAGAAGAACAATTTATATTGAATGATTCTTCTGAAGAATTTTCCAATAACCAACAGAATTCCTCTAGAACTCCATCTTGTGTATGGAGATTCTTTACTAAAATATCCGATTCTAATTTAGCAGCTTGTTGTAATCTTTGTAATAGGCAATTATCATATAAAACTACTACATTTAACCTAAAAAGACATCTTAAAAGGAAACATCCTGAAGTTTTAACGAACACTCGTCATGATCTGgaacaagtttttttaattgaagaacCGTTTAAACAAGAACTTGAagacaataaaattaaaaaccatgAGGATAATTTTGATGATGatcaatatattcaaaaatataattttaatgttgataTGAATACCAGGAGATCACAAATTTGGAATGTTTTTACCATACATTCAATGTCCGATTCTATAGCTACATGTAATGTTTGTAATCAACAGTTTTCCTATAAGAGCACAACCAACGATCTTAAAAGGCATTTTCAGAGAAAACACCCAGATATatcaatggaaaataaaatagaacAAGTTAAGGTTAAAATTGATCCATATGAAAGTGATACAGTCCCAAATGTAAATAGCAGTGAAACTGACGATGATCAAGAATTTCCCaatgaaaaaaagttaaaaaaacatTCGATTCTTTGGAATTATTTTACCAAAAGTATATCTGATGAATATCTAGCAACTTGTAATATTTGCAAAAAGAAATTATGTTACAAAAGTACCACAACGAATCTTAGAAAACATCTTAACAGTAAACATCCACGCATTCAGATAAATTTGACAGGTGATCAAGACCAAAATCagGCATCTAAACAATCAACTGATTCACAAGACCCAAATGAAAATGCATTAGATGATTATACAAGTACTATTGAAAACGCAGAATCCTCCCAGCCAAACATAAAAAAAGAAAGGAGGCATTATTCGAAAGTTTGGAATCattttacaagaaaaaaaacAGATGAGTGTATAGCTTCTTGTAATCTCTGCGATAAAGAAATCGGATATAGAACATCAACTTCAAATATGAAAAAACATTTGATTAGTCTTCATCCTGACATTGATTTTCAGTTGGAGACCGAAATACATCAGAATCAGgtaATAGATGAATCTCACGTAATCTGTCAAAGTTGTATCGACGATATAGAAAAAGTTTaccaatttaaacaaaaaataacaaaatcttTCGATTTCTGGAGCAAATTAGAGTCAGAACTTGAAATTGAAACTTATAAGGATATCAGCGACACTACCAATGATAGAGATCAAACTGAATTGGATAGTGACAGTTGGGTGAAATTTACTTGTGACAGATGTCATCAAGAATTCGAGTCTGCTTGTACAATGCTTAACCACACTTGTACTACAGACGATAAAGTGAAATATCAAGTTAATGTCGCCCGAAAACCGATTAAGTTAACTTGTAAATATTGTggaattgtttttaataaaaagtggaAGAGAGATAGGCATTTGAAAAGGTGTCGAAATCCCGTAGAAAAGAAATTCGATTGCACCGTATGCGAAAAATCCTACAAATCTGCGTTTTTGCTCAGAGAACACATGTCCACTCACACCGGCGAACGAAATTACATGTGTCATTTTTGCGGTAAAACATTCCATAGAGCTTCTGTTAGACATAAACATCTGCAAAGTCACAATCGAAAGCCTGGCGAGACGATCAAACGTAAACCGTTCTTGTGTTTCATTTGCGGCAAAACCTTTCCAGCGAACGTAGCAACTAGACACATGAGGATGCATTCGGGAGTTAAAAGAAAAGAATGTCATATTTGTTTCAAGAGGTTCGACCAAGTAGCTCATTTGAAGGTACACCTTCGTACACATTCTGGTGAAAGGCCGTACGAGTGTAGGATCTGCAGTCGAAGATTTTCTCTAGCGGCAACTCTTCGTAAACATATGCGACTTCACGTTGATACAAAAGAGATGATGACTGATGATATCCAGCAAGATTTGTCAATTGATACACCAATGAATTAA
Protein Sequence: MSTRRSPVWNVFTESKENKGIAICNICSQEFSFRTTTTNLLKHVQRKHPEINIILNTSIHIEAQKSIGLPELLPKGIEIIIEDECDGNQPKEEPESFTEDNSNSTVDRYYKNVSSMWLHFTKIETSSGFSAVCNVCDKEISYKTTSNLKKHLERIHPEYLEGSEETSMKCQFCLENFISETDLQIHIQKYHPVQLPNKIQRSEKRSSVSGSDKESLDSEEEQFILNDSSEEFSNNQQNSSRTPSCVWRFFTKISDSNLAACCNLCNRQLSYKTTTFNLKRHLKRKHPEVLTNTRHDLEQVFLIEEPFKQELEDNKIKNHEDNFDDDQYIQKYNFNVDMNTRRSQIWNVFTIHSMSDSIATCNVCNQQFSYKSTTNDLKRHFQRKHPDISMENKIEQVKVKIDPYESDTVPNVNSSETDDDQEFPNEKKLKKHSILWNYFTKSISDEYLATCNICKKKLCYKSTTTNLRKHLNSKHPRIQINLTGDQDQNQASKQSTDSQDPNENALDDYTSTIENAESSQPNIKKERRHYSKVWNHFTRKKTDECIASCNLCDKEIGYRTSTSNMKKHLISLHPDIDFQLETEIHQNQVIDESHVICQSCIDDIEKVYQFKQKITKSFDFWSKLESELEIETYKDISDTTNDRDQTELDSDSWVKFTCDRCHQEFESACTMLNHTCTTDDKVKYQVNVARKPIKLTCKYCGIVFNKKWKRDRHLKRCRNPVEKKFDCTVCEKSYKSAFLLREHMSTHTGERNYMCHFCGKTFHRASVRHKHLQSHNRKPGETIKRKPFLCFICGKTFPANVATRHMRMHSGVKRKECHICFKRFDQVAHLKVHLRTHSGERPYECRICSRRFSLAATLRKHMRLHVDTKEMMTDDIQQDLSIDTPMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911492;
90% Identity: iTF_00911492;
80% Identity: iTF_00911492;