Lcap040562.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- Snapc4
- Assembly
- GCA_949126875.1
- Location
- OX421408.1:4756536-4760019[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.29 9.8e+02 1.6 0.0 2 17 186 201 185 203 0.91 2 5 1.5e-08 5.2e-05 24.9 0.3 1 42 291 335 291 338 0.83 3 5 1.1e-11 3.9e-08 34.9 0.1 1 46 344 393 344 393 0.97 4 5 2e-10 6.7e-07 31.0 0.0 1 43 400 442 400 445 0.96 5 5 4.4e-08 0.00015 23.4 0.1 1 44 451 495 451 496 0.91
Sequence Information
- Coding Sequence
- atggaaagtgATGATGAGgcagatttgaaaaaaatagtagatATTATAACGGTGTCCCAAGAAGATAGTTCCACTCAATTAGAATATCAGGAATTTATAAATTCAGACGACAGTGACGATGAAGACGAGATTGATTCCTctgaaaatgataaaaatgaggATGTTGATAAAACTTACAAAATTGATATTTCAACGATTTATAAATATAGTCCCAATGCTTCATTAAAACCAGAAGAAAAGGCAATAATAGATTTATGTGAGGACTTTGaattaaaaaacatacttattctaaatagacaaaaaaatatacaactgATACAgctatataaaaaatttaaagatcTCTTAATTGAATGTAAACAAAATTTAGTAGATAAAAACGACTTGATAAAACAATATTCCAACGCCCACAAAGCACAGTCTCAATCGTCAGGATCTTGGCGTTTGGGAGCTCCTTATTTTAAAGACAAAGCATTCTATGTAGCTCCCGCGAACGATGATGTATTAAGAAAGAAAGCTAATAGCGAGCTAAGTTACTATGATTTCCAGCTACCTAAAAAATGGACTAAATTTGAATATGATAGACTTATAAATGCAGTAAAATTCAATTATAACTCCAATCAAATTTTAGAAGTTAAGAGAAACATCAATCAACTGAGTAGCTCTGATGATGCAGAAAAAGAAACTAAGATTAAGGATTTAGAATTGAGATTGAAGGAATTGAATGATACAGATAATTTGGAAGTGCCACCATTAGGATCAGATAAGAATATTAATTGGATTAGAGTAGCTGAAACGTTTTTGAAAGATAGATATTCAGATTTTGAGTGTCGGTCATGTTGGAATATGGTTGCTCATCCGGCAATTAATAAATCCAAATGGACAGCAAAAGAAAATAAGCAATTATTGGCTCTTGTGAGAAAGTACCACAGTCAAAATTGGATTCAAATAGCAAAAGAACTAAGTACTAACAGGACATGTTTAAATGTTTGCCAACACTATTTCAGTCAATTCTATGACAGCCTTAAAAAGGGAGAATTTACATTCAATGAAGATAAGAAGTTGTTACAATTGGTGAACGAATATAGGATGGGTAATATTATACCTTGGACTAAAATTAGCAGACATTTCAAAAATCGATCTAGGGTTCAACTACATCACAGATTCATTTACTATTTGAATCAGTCAGATAAAAAAAGAGGAAAGTTCTCTGATGCCGAAGATGTCATAATCTTATTATGTGTGAAGAAGTTTGGAAggcaatttaaaaaatgtgcaGAGTATCTGCCAGATCGTTCCACATCACAAATAAAAACCAGATACACATCTAGTTTAAAATCTGGAGTGAAAAGAGGAACATGGACTGTTGAAGAAGACCGACAAATCTATGAATTTGCTCAAAAACATGGTTCGATGTGGACAGAACTCTCCCAACAAAAAGATATCCAAAGGGCAGCAGGTCAACTCCGCCAAAGATATGTTACTATAtgtgattattttaaatcacaTCCAAACGCTAAAATTGAGGATATTCCCAGGAGAAAACATTCTCTTGACGTTAATTTTGCAGataaatttgatttaataaatgAAGCAATAAATAGATTCACGGATAGCCCCCTTATCCCATCGCTAAGGGAAGTAGAAGACATGCTACTTGATATAAAAGAAGTGCCCTTTGTCAAAGTTGAATCGTACGAACAGGATTTTTTCGAAGAGCGAAAACCTTTCACAGACGTCGATAGTTTGTTGACTGATTTTTTCTGGAACAATTCAGATCAAGAAATAAAAGTCGTATCTCgaccaattttaaaaaagacGATCGAAGAGGCTGAAATAGTTTTAGACATTCTAAGAGCAAACTTACACATTCCCGAAGATTTAAGTACATATCCAATGTTGGATACCCTGGACAAAGACATCTTGAAAGAACTTCGTAAAAGCGAACGTATACACAACAATTCCACCGTTAGTGCAGCAATTCCACCGAATTTTTTCTCGACCACCGGAATCAGAAGtttattagtaaaaaattataaattcataAATTCCCCGAAAGATAGAATTTTCTGCGATATGGACGTACCGCTATCGGTTAAAAGTAGAGTTAAAAGCGAAATGGACAAAGAACTTTGTCAGATGAATTCAACAGAAAAACAAAACGTTGAATTAGACAGGGCGTTGTTTTATGAAAGATTTTTATCGTTATTTAAATGGCCAGCTATTTTAACATTGGACGATCCTTCTAGAGAACTTTTAAGCATTTCGGAAAATTTACAAAACGAATTTAGACCGTTAGTTAAAAGAACGTACAGTAGAATAAAGAACCCTGAAGAAAAAGTTGGTACAGCGAAAAAGATTAAAGTGATAGAAAACAAAGAATCTCTGAAATTGACACCTGTCACTGATAAAAGTATTATCATGAACCTTATGAAGGACACCAGTAAAAAGTTGTTCCGATTGAATCAAGTTCAATTCGGAGATCAAACAAAGACTGTTATAGAAGAAGTTGATGTACGAAATATACAGTCTACATCAAAGAGTTCTGTTAAGAAGATAGTTAAaccaaagaaaagaaaaaaaggtgCGTTACGTTTAAGTAAACTAGGTAGGAAAGTTTTGGATACAACCGAAGATTCTGCGACTCCTAAAAAGAATACCCAAAGTACTCAGCTGTTGAAAGATGAAGCTTGTAATTCTGTTGATGTCAAAGCTAGTACTTTGATGGATGTTACTGACAATTCTGACGCAGtCGACGATGATTTGACGGATCTTCAAAAGCTGTCCGAATTTATAAAAGCAGAAAAACATCGTGAATAA
- Protein Sequence
- MESDDEADLKKIVDIITVSQEDSSTQLEYQEFINSDDSDDEDEIDSSENDKNEDVDKTYKIDISTIYKYSPNASLKPEEKAIIDLCEDFELKNILILNRQKNIQLIQLYKKFKDLLIECKQNLVDKNDLIKQYSNAHKAQSQSSGSWRLGAPYFKDKAFYVAPANDDVLRKKANSELSYYDFQLPKKWTKFEYDRLINAVKFNYNSNQILEVKRNINQLSSSDDAEKETKIKDLELRLKELNDTDNLEVPPLGSDKNINWIRVAETFLKDRYSDFECRSCWNMVAHPAINKSKWTAKENKQLLALVRKYHSQNWIQIAKELSTNRTCLNVCQHYFSQFYDSLKKGEFTFNEDKKLLQLVNEYRMGNIIPWTKISRHFKNRSRVQLHHRFIYYLNQSDKKRGKFSDAEDVIILLCVKKFGRQFKKCAEYLPDRSTSQIKTRYTSSLKSGVKRGTWTVEEDRQIYEFAQKHGSMWTELSQQKDIQRAAGQLRQRYVTICDYFKSHPNAKIEDIPRRKHSLDVNFADKFDLINEAINRFTDSPLIPSLREVEDMLLDIKEVPFVKVESYEQDFFEERKPFTDVDSLLTDFFWNNSDQEIKVVSRPILKKTIEEAEIVLDILRANLHIPEDLSTYPMLDTLDKDILKELRKSERIHNNSTVSAAIPPNFFSTTGIRSLLVKNYKFINSPKDRIFCDMDVPLSVKSRVKSEMDKELCQMNSTEKQNVELDRALFYERFLSLFKWPAILTLDDPSRELLSISENLQNEFRPLVKRTYSRIKNPEEKVGTAKKIKVIENKESLKLTPVTDKSIIMNLMKDTSKKLFRLNQVQFGDQTKTVIEEVDVRNIQSTSKSSVKKIVKPKKRKKGALRLSKLGRKVLDTTEDSATPKKNTQSTQLLKDEACNSVDVKASTLMDVTDNSDAVDDDLTDLQKLSEFIKAEKHRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735485; iTF_00911911;
- 90% Identity
- -
- 80% Identity
- -