Lcap043846.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421408.1:28471199-28475468[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-07 0.00012 23.4 0.0 1 39 221 258 221 264 0.87 2 2 5.7 1.3e+03 0.8 0.0 18 28 302 312 287 313 0.86
Sequence Information
- Coding Sequence
- ATGGCACACGTCTCATGGCTGAATAAAATTTGCAAACCCAAATTGTTGACTAAGGATCCAAAGCTGGTTAGGGAAAATCATAGAGTATGCGATATACATTTCTCTGATAATTACCGTTTACATGGGCGTAGTGGTTCAGATTTAAAAATTGGAAGCTATCCCACTGTTCATTTACCTGACCCTGCTTTAGAagGAGAATGTATGAAGATTGGTTTCAAAATTGTAGCCACTGTCTGTGACCAATACTGTGCCCCAGCAGTTAACCTTCTTCTTAAGGAAACATCAGAGGCATACTTAAGAGACGGAAACAATAGAGTGCCTTTTGGATTTGAGGTAGATGGGCAGGAGATAATACCATGGTTTAATCCTCCACATCTACTAAAGGGATTTCGCAATAATATGTTGACAAAGGACCTTCATTTTAAGATGGATGAGGTAGCTAAAGTTGCAACACGGGcagatattgaatatttttataatttggaTACTGCCGAAGATGTCAAGATTTGCCCAAAATTAACAGATGCTCATGTGATAAGAAGCaagattaaaaaaatgaaggtcTCTTGTTGCACGCAAGTTTTCAGCTACCAAGTTGGTTCCCTTATGAAAAGGATTAGTCAGTGGAGTATGGCTGGAatgaagaaaattttgaagtatTCCGAGGAAAATATGTTGAATGCATTATCTGATGTCAGAAATGGTATGTCTTATAGAGCTGCATCCATAAAGAATGGTGTTCCTCGTATTACTATTATGCGCAAACATAAGGGTAACTTACCAGCTAAAAGTAAAATGGGTCCTGCTACATCATTTACTGAAGAACAGGAAAACATATTAGTTCACTGGATTATCACCATGGCCAAAGCTGGTTTTCCTATCTCCAAAGAAACACTACTGAGTAGTGTTGCAAAATTAGCGACTGAGTATAATGTAAAATTTGGAGGAAATGCTAATCCTGGCCGTAAATGGTATAATTTATTTCTCTCGAGGCACCCAAATATTTCCATTAGAACAAGTCAGAATTTAGTTAGGAGTAGAAGCTTAGTATCAGAGGCAGATATATCAAACTGGTTTCGTGAAGTGAAGAGCTATACGGACCAACATGAATTGACTAGCATATTGAATGATCCAAGGCGGGTATTCAATACAGATGAaactgcattttttttaaaccccTAG
- Protein Sequence
- MAHVSWLNKICKPKLLTKDPKLVRENHRVCDIHFSDNYRLHGRSGSDLKIGSYPTVHLPDPALEGECMKIGFKIVATVCDQYCAPAVNLLLKETSEAYLRDGNNRVPFGFEVDGQEIIPWFNPPHLLKGFRNNMLTKDLHFKMDEVAKVATRADIEYFYNLDTAEDVKICPKLTDAHVIRSKIKKMKVSCCTQVFSYQVGSLMKRISQWSMAGMKKILKYSEENMLNALSDVRNGMSYRAASIKNGVPRITIMRKHKGNLPAKSKMGPATSFTEEQENILVHWIITMAKAGFPISKETLLSSVAKLATEYNVKFGGNANPGRKWYNLFLSRHPNISIRTSQNLVRSRSLVSEADISNWFREVKSYTDQHELTSILNDPRRVFNTDETAFFLNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -