Lcap008445.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- cheC
- Assembly
- GCA_949126875.1
- Location
- OX421397.1:24953795-24955647[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-08 1.7e-05 26.0 0.0 7 39 35 66 31 72 0.88
Sequence Information
- Coding Sequence
- ATGTTTGGaactcgctttgggaacaaacctattatagtACAGATAGTCACAAACTATCAAAGAAAGACCCAACGACAGAGCTGGACCATTGAACAGCGCAATAATGCTTTGGCTGCTATACGCTCAGGTGCTAAAACACGCGAGGCTGCAAGAAATTTTGGCATTCCCGAATCAACACTGCGCCACCATCTAAAACCTGGATCAGAAGTTGACCGCTTGGGGAGGAAACCACAAGAAAAAGAGTTAGCAAATCACGTCATGAAGTTGGCAAATTTATTCTATGGCATAACTCCACGAGAGCTGAGAAGAATAGCTTTTAACTTCGCAGAAGCTAATCATCTACCTCATAAGTTCAACAAGGAATCTGGGCTAGCAGGAAAAGATTGGCTGACGTGCTTTATGAAGAGAAATCCCAAGCTGAGACTTCGACAACCAGAAGGTACAAGTCTCAATCGTATATTCTCATTTAATTCTGAAGCTGtaggaatttttttcaaaaacctaGAAAAACTATTGACAAAGTTCAAATTTCAGAGCAATCGAATCTTTAATGTCGACGAATCTGGTATAACCTCTGTCCAGAAAAAGTCTGGAAAAGTTTATGCGAAAAGGGGACAGAAACAAGTCGGCGTTGCTATTTCAGCTGAAGGTCAAACTATTACCATCTTATGCGCTGTCAGTGCAGCAGGGACATACGTTCCCCCAATAataatttatccgataaaacgGATGTCTCCTTAA
- Protein Sequence
- MFGTRFGNKPIIVQIVTNYQRKTQRQSWTIEQRNNALAAIRSGAKTREAARNFGIPESTLRHHLKPGSEVDRLGRKPQEKELANHVMKLANLFYGITPRELRRIAFNFAEANHLPHKFNKESGLAGKDWLTCFMKRNPKLRLRQPEGTSLNRIFSFNSEAVGIFFKNLEKLLTKFKFQSNRIFNVDESGITSVQKKSGKVYAKRGQKQVGVAISAEGQTITILCAVSAAGTYVPPIIIYPIKRMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00002482;
- 90% Identity
- -
- 80% Identity
- -