Lcap045274.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421409.1:19045020-19047155[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-08 1.1e-05 26.7 0.0 4 38 19 54 18 58 0.92
Sequence Information
- Coding Sequence
- ATGTCAACCAAACAGCAGAAAgatgataaaaaaagaaaaaaatggaatgTGGGAGATATGGAACGTGCAATAATAGCTGTCAGGCAGCATGCAATGGGTACGCTAAAAGCTTCAAAAATGTTTAAGGTCCCACGTTCTACGTTGCAACGTTCTGCAAAAAAGCTAGAACTACAGCCAATTGAAGCAGCCCAAATAAAGCTAGGGCGTAAAGCTATATTAGGGAACGATCTAGAAGACGAGTTAGTTCGTTATATTTTAGAGATGGAAGCTAAATTTCATGGATTAACCAGAAAAGACGTTAGGAGGATGGCGTACACTTTAGCTACCAGGAACAACATCAAACATCCGTTTGGAGGTAACATGGCGGGCAGAGCCTGGCTAGGACTTTTCCTGCAACGCCATAAAGAGCTATCAGTACGACGACCAACGGGAACATCGTATTCTCGAGCAAGAGGCTTTAGCAAAGAAAATGTTGCATCCTTCTTTAATGTTCTGGAAAAAGAATATGACAAACATTTATACCCCCCTGAACGTATCTTCAATGTTGATGAGACAGGTCTTACGGTTGTACAAAACAAGATTGCACAGGTTGTAGGCCGAAAGGGGAAACGACAAATTGCATCATTAACTTCTGCTGAAAGGGGTTCATTAATAACCCTCGTGGCAGCGATGAGCGCTGCTGGACAATTCATCCCACCAATGATGATATTCCCACGAAAAAATATTAACCAGCAACTGATGAGAGGAGCTCCTCCAGGTGCCATTATGGAGGTGCACCCCAGTGGATGGATACAAAGTAATATTTTTACAAGATGGTTTCAACATTTTATTGACACAGTGAAACCCACAGAGAAATCACCAGTCCTGCTTATTTTGGATGGCCATTACAGCCATACACGCAATATTCAAGTCATAGATTTAGCTAGAGATAATCATGTGACTATAATTGTCTTACCTCCCCATTGTACCCACAAACTCCAGCCGTTGGACAAAACATTCATGGGAGTTCTTAAGTCTTACTACAGCGAAGAGATCAGGGTCTGGTTACGCCACAATAATCGCCCACTAAGTCCATTTGATGTGTCAGAGCTCTTTGGGAGAGCCTATTTGAAATGCCAAACTGGAGAGATTGCTGTTAATGGTTTCCGAGCTACAGGCATTTATCCattgaataaaaacatattttcagatGCTGATTTCATTGCAGCTGAAATTGAAGCAGAAAAGACTACGTCAGTCGCACCTGATGACGCTAGTGATGAAGAGGATGAGATGATGGTGGCTTCAACCTCTGGTGTCAATTCGAATAAACCTACAAATTCTGACATTCCAACATACGATAAATCTACCAACTCTGAGATAACACCTGATCGTCGCTCAAACCAGAGCAATTCATCGTCTAATTCTCCCACTTCTCCCTCTGTGCCTAACAAACAGCTTGTTGATATTCCTACAACTAATACACAGCTTGTTCCTATTTCTGCAGGTAATACACAGCTAGTCGCTATTCCTACAACAAGCTTTTATAAAAAGTCTGCCACGCCTTTCAGAGGACCTTGTCCAGAACATGGCGTAAAAAGAAAGTTATTTCAGAAGTTAACTCCATCAACTCCTTCCACATCTGGGTCCGGGTCTTCTCGAACCTCTCTGGTAACACCATATGATCTTTCTCCTGTGCCTTCTTTGAAGAAAAAAACCTCAAATCGTGGGCGTAAGCCAAGTAAGTGTTCGGTGATAACCTCTTCACCTTATAAAAATGACTTGCTCCAGTCTCTTGACAAggttaaagaaaagaaaaaagggaCAGGAGAAtgcaaagaaaaacaaattaaagaaaggaataaaaaaaagggGAAACGCAAGCAGGTTACAAAGAACCAGAAAAAGGAATCTGATTCGAGCACCGAGGATGAGGAGGAATATGTGCCCGCAGATGAGGATAGCGACTACAATGAATTTCCAAATGCCCAGTCTCCAAAGGACGCAGCTGACGTGACTTGTATATTTTGCGAAGCACCTTTTGCAGAGGATAACCACGGTGAAATCTGGATAAAGTGCTTCATGTGCAATTTATGGGCCCATAACGAGTGCGCTGGGGCCGAAAATGAACAATATGTTTGTGATTTTTGCAAGTAG
- Protein Sequence
- MSTKQQKDDKKRKKWNVGDMERAIIAVRQHAMGTLKASKMFKVPRSTLQRSAKKLELQPIEAAQIKLGRKAILGNDLEDELVRYILEMEAKFHGLTRKDVRRMAYTLATRNNIKHPFGGNMAGRAWLGLFLQRHKELSVRRPTGTSYSRARGFSKENVASFFNVLEKEYDKHLYPPERIFNVDETGLTVVQNKIAQVVGRKGKRQIASLTSAERGSLITLVAAMSAAGQFIPPMMIFPRKNINQQLMRGAPPGAIMEVHPSGWIQSNIFTRWFQHFIDTVKPTEKSPVLLILDGHYSHTRNIQVIDLARDNHVTIIVLPPHCTHKLQPLDKTFMGVLKSYYSEEIRVWLRHNNRPLSPFDVSELFGRAYLKCQTGEIAVNGFRATGIYPLNKNIFSDADFIAAEIEAEKTTSVAPDDASDEEDEMMVASTSGVNSNKPTNSDIPTYDKSTNSEITPDRRSNQSNSSSNSPTSPSVPNKQLVDIPTTNTQLVPISAGNTQLVAIPTTSFYKKSATPFRGPCPEHGVKRKLFQKLTPSTPSTSGSGSSRTSLVTPYDLSPVPSLKKKTSNRGRKPSKCSVITSSPYKNDLLQSLDKVKEKKKGTGECKEKQIKERNKKKGKRKQVTKNQKKESDSSTEDEEEYVPADEDSDYNEFPNAQSPKDAADVTCIFCEAPFAEDNHGEIWIKCFMCNLWAHNECAGAENEQYVCDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910602; iTF_00910603; iTF_00910604; iTF_00910605; iTF_01105779; iTF_01105814;
- 90% Identity
- iTF_01105779;
- 80% Identity
- -