Lcap039355.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421407.1:15201677-15202117[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-09 1.7e-06 29.3 0.0 4 41 11 47 8 50 0.89
Sequence Information
- Coding Sequence
- ATGGCGCCAAAGCGAGGATATTCTCAAAATCAAATGGATTTAGCCCTGCAGGCAGTTACAAAAGGCATGCCAGCTGCAACTGCAGCAAAATTATATAATGTACCTAGGACAACTCTCCTGGATACAAAAATGGGAAGAACCCCCATATCTTGTAAGATGGGCCCACCTTCGATACTAAGCCCTGTAGAAGAGGAGATATTAGTTCCGTGGATTTTGTTACTGGCACGAAAGCATCAACCTGTTACGAGAGAGCAACTCATGGACAGTGTGCAGATGATAATAAAGCAAAAAAAAGCAGACACCTTTTACAGATGGAAGACCAGGAAAAAAATGGTTTGCAGCTTTTCTGAAACGACATCCCCAGATCAGTACAAGGATTGCTCAAAATTTAACTCCTGCAAGGGAGAACGTAACAGAATCACAAATCAGACGTTGGTTTAA
- Protein Sequence
- MAPKRGYSQNQMDLALQAVTKGMPAATAAKLYNVPRTTLLDTKMGRTPISCKMGPPSILSPVEEEILVPWILLLARKHQPVTREQLMDSVQMIIKQKKADTFYRWKTRKKMVCSFSETTSPDQYKDCSKFNSCKGERNRITNQTLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910466;
- 90% Identity
- iTF_00910466;
- 80% Identity
- -