Lcap008756.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421397.1:25991688-25993694[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-09 2.1e-06 29.0 0.1 1 38 18 56 18 60 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGTCGATATACTCGAAAAGTTGGCATTGCTCCTCGAGCAACCTGGTCAGAAGAAGCTCTAAAACAAGCTGTAAGTGAAGTAGAATCTAAAGCAATGAGCATCAATGCAGCCTCCAAACAGTTTGGTGTTCCTTCACGTACATTAAGGCGACGTATGTTAAAAAAGGACTACATTAAACGTGGTCTCGGAAAAATTCCTGCTCTTGGTTACgatgtagaaaaaaaattagttttacataTTAAGAAATTGGAAAAAGCGGGCTTTCCATGTACCCGAACTGATGTTAGAAAATTGGCATTTCAGTTAGCACAACAGTTAaatattaaacataattttaatgtagGTTCAGAAATGGCTGGAAAACAGTGGCTACAAAGCTTTTTAGAAAGACATGAAACTTTAAGTGTTAGACAAGCAGAAGGAATGTCTCGAGCTCGAGCACTAGGATTTACAAGGGAAGAAATTGaatctttttttaaactgtATGAGGAAACTTTAAGTCAACACGATCTTTTTGACAAGCCaggtcatatttttaatatggaCGAGACTGGTGTACAAATGAACAACAAACCCGGAAAAGTAATCGCTACCAAAGGAAGCAAATTGGTCCAACACATAACTTCTGGAGAAAAAGGTGAAACCATTTCGATTGTTACGTGCAATAATGCAGAAGGAGTTTTTCTACCACCTGTGTTAATCCTTAAAGGAGTAAATAAAAAACCGGAATTTTTGGACGGTTTACCACCTGGATCTAATGTATATATGAGTAAAAAATCTGCTTACATAAACTCGGAGCTATTCATGAAGTGGTTGGTAGAACATTTTATTCCTCGCAAACCTCAAGGTAAAGTTGTGTTACTACTTGATGGTCATGGTTCCCACTGCAACGATATTAATATGTTGGAAACAGCAGCTCTACATGACATAATTCTTTTGGGACTTCCCAGTCATACAACACACGGTTTACAACCGTTAGATCGTTCCTTTTTTAAaccttttaaaacattttatgcaACAGAATTGCGTCAGTGGATTGTTGCAAATAAGGAAAGAAAAATTACGAGATATCAAGCTGGAAGACTAATTGGTGCTGCTTGGATCAGGGCAACTTCTACGGTCAATGCTCTATCAGGTTTCAAGGCATGTGGAATTTTTCCGTACAACCCCAACGCTATACCTGATCATTATTACACGGTAGCAGATGCTTCCCAGTATTCTACGGAGAATGCTGTTACTACTAATAtgtctgaaaataatttaacgaCACCAACAGAAAACGCAGACACTTTGCCAATCAAGGAAAATTTACTCGTTCCCATGAATTCCCCACCCTCCACATCTACAAGTGAACCGATGTTTGGATCTAATACTGTAGAAAAAGCGTCTTCTACCAGGCAAGCAACTGAAAAAATACCAATTGTTATTGAATGCTCCCCCTCTACATCTAAAAGTAAATCAGTTTTATTAGATATTAGTCCAACTCAACAACTTCTGCAGCTATCTCCAATTCCCATTGTTGCTAAAGTGCCAAGTAAAAGAAAAAGACAAGTAGCACAATTATTAAATTCTCCCACTGTGATTaacgaaaagaaaaagaaaattgaggAAGCTTTACATAAAAGTCaggaaaaagaaaacaaaaagatCAATAAGACAAATAAAGGTAAAACATCAAAAGGAAAAGAAATAGTTAAACCAACTACCCTTCAAAACGTTACTAATCGAAAagaaaattataagaaaaaagaaaagaaaaagaaaaatattgacaTTCACTCCTCCTCTTCGGAATCAGAAGAATCCGAACTGTCCCATACTAGTGATGAACTAAATGAACAGTGTCGCGAGTGCCTTGAAATCTATGGTACCACTAAATCTACTGCTGATTGGATTCGATGTATTTCGTGTGAAAAATGGTTGCACGAAAATTGCACTCTTTATGGCGATTTCTGCAACAAATGTGGCCGtgcagaaaaaattaaaaatataagaaaataa
- Protein Sequence
- MPRRYTRKVGIAPRATWSEEALKQAVSEVESKAMSINAASKQFGVPSRTLRRRMLKKDYIKRGLGKIPALGYDVEKKLVLHIKKLEKAGFPCTRTDVRKLAFQLAQQLNIKHNFNVGSEMAGKQWLQSFLERHETLSVRQAEGMSRARALGFTREEIESFFKLYEETLSQHDLFDKPGHIFNMDETGVQMNNKPGKVIATKGSKLVQHITSGEKGETISIVTCNNAEGVFLPPVLILKGVNKKPEFLDGLPPGSNVYMSKKSAYINSELFMKWLVEHFIPRKPQGKVVLLLDGHGSHCNDINMLETAALHDIILLGLPSHTTHGLQPLDRSFFKPFKTFYATELRQWIVANKERKITRYQAGRLIGAAWIRATSTVNALSGFKACGIFPYNPNAIPDHYYTVADASQYSTENAVTTNMSENNLTTPTENADTLPIKENLLVPMNSPPSTSTSEPMFGSNTVEKASSTRQATEKIPIVIECSPSTSKSKSVLLDISPTQQLLQLSPIPIVAKVPSKRKRQVAQLLNSPTVINEKKKKIEEALHKSQEKENKKINKTNKGKTSKGKEIVKPTTLQNVTNRKENYKKKEKKKKNIDIHSSSSESEESELSHTSDELNEQCRECLEIYGTTKSTADWIRCISCEKWLHENCTLYGDFCNKCGRAEKIKNIRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910562; iTF_00910563; iTF_00910564; iTF_00910565; iTF_00910566; iTF_00910560; iTF_00329227;
- 90% Identity
- iTF_00910562; iTF_00910563; iTF_00910564; iTF_00910565; iTF_00910566; iTF_00910560; iTF_00329227;
- 80% Identity
- iTF_00910562; iTF_00910563; iTF_00910564; iTF_00910565; iTF_00910566;