Lcap024759.2
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421402.1:29195170-29195736[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-08 8.4e-06 27.0 0.0 1 40 19 57 19 62 0.88 2 2 1.8 4.3e+02 2.4 0.0 18 28 100 110 84 112 0.81
Sequence Information
- Coding Sequence
- ATGTCCACTATAGGTACCAAAAACTGCACTGGAatgaagaaaattttgaagtatTCCGAGGAAAATATGTTGAATGCATTATCTGATGTCAGAAATGGTATGTCTTATAGAGCTGCATCCATAAAGAATGGTGTTCCTCGTATTACTCTTATGCGCAAACATAAGGGTAACTTACCAGTTAAAAGTAAAATGGGTCCTGCTACATCATTTACTGAAGAACAGGAAAACATATTAGTTCACTGGATTATCACCATGGCCAAAGCTGGTTTTCCTGTCTCCAAAGAAACACTACTGAGTAGTGTTGCAAAATTAGCGACTGAGTATAATGTAAAATTTGGAGGAAATGCTAATCCTGGCCGTAAATGGTATAATTTATTTCTCTCGAGGCACCCAAATATTTCCATTAGAACAAGTCAGAATTTAGTTAGGAGTAGAAGCTTAGTATTAGAGGCAGATATATCAAACTGGTTTCGTGAAGTGAAGAGCTATACGGACCAACATGAATTGACTAGCATTTTGAATGATCCAAGGCGGGTATTCAATACAGATGAAACTGCATTTTTTTAA
- Protein Sequence
- MSTIGTKNCTGMKKILKYSEENMLNALSDVRNGMSYRAASIKNGVPRITLMRKHKGNLPVKSKMGPATSFTEEQENILVHWIITMAKAGFPVSKETLLSSVAKLATEYNVKFGGNANPGRKWYNLFLSRHPNISIRTSQNLVRSRSLVLEADISNWFREVKSYTDQHELTSILNDPRRVFNTDETAFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327882;
- 90% Identity
- iTF_00327882;
- 80% Identity
- -