Lcap045826.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
-
Assembly
GCA_949126875.1
Location
OX421409.1:23842064-23849294[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.4e-10 1e-07 33.2 0.0 2 45 524 567 523 567 0.94

Sequence Information

Coding Sequence
ATGTTCACAAATGATGAATGCAATCGGTTAAATCCGAATGCGGTTCCAACATTATTCCCATTACAAGAGGGATCTTCTAGGGGACCTAATTTTGATCATACATACACACCTTTGTATGACTTGAAATCTCTGGATAAATCAGAGAAAAACGAGGAGAAAAATATGCTACGTATAAACATTTTGCAAGATATAATTATTACTGCagGTGCAGTCTCAGATCAAAGTATTACTGCCGATGTAAACTGCCAAACTCCACGTTCTACTTCATCTACACAAACTTGCAGTTATCTGTCCCATAATAGTCCACGAAAGAGGAAATATCGTAGTTGTGTTACAGATCTCAAGAATGAGATAATAGCTTTAAAGAAGAGAGTTGTGGACTTAGAACATAGATTCGAAAATATAGAAAGTGAAATAAGTTTGGAACAATTTTATGGACTGACTTATAAATTTTGTTGCAACGATGAAGTAGCTCGTCTAGTTAATTGCCAAATTAgtcaatcaaaaaaaaaacctaatggACGGAGATATTCACTTGAATTTAAAATGGAGTGCTTAGCGCTATATTTTACTGGTCCGAGAGCTTACAGACAAGTACTcgcaaaaaaatattgtctGCCATCACCTAAAACCCTCTTAAGGATTTTACAAAATGTTATGATAAATTCTGGCTTGAATAATCCACAAATATTTGCCATGTTAAAAATGAAAGCCGATTGCTTCGatgaaaaaagtaaatattgtgTTTTATGTATAGACGAAATGTCGATCAAAgcacatttattttataatcgagGAACTGATGCTGTCGTTGGTCTTTCAGAAATTGgagatataaataatacattacGACCGGCATTAAATGTATCAGTTTTAATGTTAAGAGGAATATTCAGTAAATGGAAGCAACCTGTGGCATTTAGTTTTTGCCATTCTTCATGTCCTGCGGATATATTAAAACAGCAAATAATTGAAGCAATTACTAAGTTGGGCGAGATAGGTTTGAAAATATGTGCTGTCACAACAGATATGGGATCCAATTATATGCCTTTGTCGAATTTATTGGGTGTTAATGCAAATCGGCCTTATTTTTACTGCAGGGgacaaaaaattttttacatttttgatattCCGCACATTTTTAAAGCCATTAGGAATATGCTTATAAAATATGATTTCTTAATTGACAATCACAAAATTTCATGgtcatttataaaatcattttatgaGCATGACAAAAAATATGCAGTAAGAGCGGCACCGAAATTAACTACGCCCCATATTTCTCCaagttcatttgaaaaaatgaaagcCAAATATGCTCTACAAGTATTTAGTGCAACAGTTTCTAGTGGCATGAATGTTTATATGAGATTTGGACAATTGCCGCCTGAATCATGTCACACCTCAGAATTTGTATCCAAAATGGATAAACTATTTGATATGCTCAATTCATCCAGTACCTCTTCCACAAAACTATATAATAGAGCTTACAAGAATTTACCCCATCAGATCATGGGAAAAACTAAAAACGAAagcaaaacgaaaaaaaaattcttttgctATGAGGATGAAAAAATGCAGCAAGCAATAAATGCTGTGAAATATGGTGGAATAAGCAAAAAAAAAGCATCACAACAATTTGGTGTTCCCCGTTCCACACTCATTAGGAAGCTTTCTGGTCAGGTTCCACTCAGTCGCAGAATGGGGCCTACTCCTGAATTGAATCATGAGGAGGAGGAAGTATTTGTTAATTGGATTCTTGCCATGGGAAGAAAAGGATTTCCTGTACATAGGTCTAATTTGATGTTGTCAGTGCATAAATATCTTTCAACTAGAGGGGAATCtaaatacattaaaaacttTACACCGGGTCGTTCTTGGTTGAAAGGGTTCTTGACTAGACACCCAAATATAAAAGAAAGGTATTCGGAAACAGTCTCTAAAGCACGAGCTGCTGTTACCCAAGATAGAATCTGCAGTTGGTTCAATGAAATACGTGGATATTTACAAGAAGAAAAATTAGAGGATGTATTGAAAGAACCTAGCCGTATCTTCAATGGTGATGAGGCTGGATTTCAGATTTGCCCAAAAAGTGGGAAAGTATTGGGACCAGCAAAACTAACTGAGGACTTTTACGAGAGGGTTTCTTGTGAAAAAGAGCAAATTACTGTGTTGGCAACGTTTTCAGCGGATGGTAAGGTTGTTCCACCTATGATAATATTTCCATACAAAAAGATCCCAAAAGCAATTTCTGAATCTGTACCTGAAGATTGGGCACTTGGCCGATCTGATAGTGGATGGATAAACTCACAAGTATTTTTCGAATACatgtcaaacatttttttgcaatatttgaaaaGTAGTAATATAACACGCCCTGTTATCTATTTCATGGATGGGCACCGGTCACATATGACCCAAGAAATAAGTAAATTCTGTGACGATAATGGCATAGTTTTGATTTCATTATTGCCTAATTCGACCCATATACTACAACCAGCAGATGTATCGGTTTTTAAGCCTCTCAAAGCAGGATGGGTCTCAGAAGTTAGAACGTGGAAATTCGAAAACTTTCCCAAAGACGTTACCAGGTATACCTTTGGTTCTATATTGAAACTGGTTTTTGATAAATATGCGACTGAGGCAACGATCAAAAATGGGTTCAGGAAAACTGGTCTTTACCCATTTGACGAAAATAATGTAGATTTCACTAAATGCATCCCTAATCGGAAACATGTAACCCACGAAAATGAACATAGTAAGGACTATTTGAAAGCTGTACTCAGAGAAATAGAAAACAGGATTGATAAAGAAGAATTGGAGATATTTTCAAGAACTTGCAGGAAGAATGAAGAATGGAGTGGACATTTGGAGTCAACTAACCTCTATAAAATTTGgaaacaaatcaaaagtgaatgtgaaaatatttcttCAGAGACATGTGAGAAACAACAAGAATCAAAAGCAAAGGAACACACGGCGAATGATGCAAATAATGGAATTGAAATGATACCGGAAAGTGATTCTAACAAGGAGGCAGAAATTGAAAATGATACAAACAAAGAAAATCAGATGCCACCTGAACCAGAAGCTTCTTGCTCATATACCGTAAATGCTTCCAAAACTCCAGAAGACAATAAAATTGGTTATATTGCAACACCAGAACGTTCCTGGAAAACTCCAGAAGGTATTCAGTATAAGAGATATGAAGATAAAGAGAAAGAAGGTTATAAAATACCAActcctttcaaaaaaattttagtatTTCCTTGTACTCCGGAAAATAAACCCAAACGGAGAAAAACCATTTTCCCAGCTGTTGTTTCCAGTGGAAAATATCGTGAATATTACCAGCACGAACAACAAAAGAAactcgaaaaaaatataaaaacaaagcGAACAAAAATACCCCAGTCgagagaaaaattaaattcaaaaaatgagaGCTCTTCAGATTCCGAAGAAAATGTTCAATATGAAGATGAAGACCTTGATTTGAGTGACAATGAAGAGGATTTGATACCTGGGAAATATGTTATAATTTTCTACGAAAATGAATACTTTCCAGGAAAGATTTTGAAGAGTGACAGTGAAGGAGCGGAAGTGAGTGCTATGGTTACTGCTGGTGCGGGGTCCTGGAAATGGCCCATTAAGGaagatattttgtattattttagaGAGGATATTATAAAGGAGATAAATGAACCCACTCTCAAAAACAACAGAGGACATTATAATGTGCCTGATATGAACATGTtataa
Protein Sequence
MFTNDECNRLNPNAVPTLFPLQEGSSRGPNFDHTYTPLYDLKSLDKSEKNEEKNMLRINILQDIIITAGAVSDQSITADVNCQTPRSTSSTQTCSYLSHNSPRKRKYRSCVTDLKNEIIALKKRVVDLEHRFENIESEISLEQFYGLTYKFCCNDEVARLVNCQISQSKKKPNGRRYSLEFKMECLALYFTGPRAYRQVLAKKYCLPSPKTLLRILQNVMINSGLNNPQIFAMLKMKADCFDEKSKYCVLCIDEMSIKAHLFYNRGTDAVVGLSEIGDINNTLRPALNVSVLMLRGIFSKWKQPVAFSFCHSSCPADILKQQIIEAITKLGEIGLKICAVTTDMGSNYMPLSNLLGVNANRPYFYCRGQKIFYIFDIPHIFKAIRNMLIKYDFLIDNHKISWSFIKSFYEHDKKYAVRAAPKLTTPHISPSSFEKMKAKYALQVFSATVSSGMNVYMRFGQLPPESCHTSEFVSKMDKLFDMLNSSSTSSTKLYNRAYKNLPHQIMGKTKNESKTKKKFFCYEDEKMQQAINAVKYGGISKKKASQQFGVPRSTLIRKLSGQVPLSRRMGPTPELNHEEEEVFVNWILAMGRKGFPVHRSNLMLSVHKYLSTRGESKYIKNFTPGRSWLKGFLTRHPNIKERYSETVSKARAAVTQDRICSWFNEIRGYLQEEKLEDVLKEPSRIFNGDEAGFQICPKSGKVLGPAKLTEDFYERVSCEKEQITVLATFSADGKVVPPMIIFPYKKIPKAISESVPEDWALGRSDSGWINSQVFFEYMSNIFLQYLKSSNITRPVIYFMDGHRSHMTQEISKFCDDNGIVLISLLPNSTHILQPADVSVFKPLKAGWVSEVRTWKFENFPKDVTRYTFGSILKLVFDKYATEATIKNGFRKTGLYPFDENNVDFTKCIPNRKHVTHENEHSKDYLKAVLREIENRIDKEELEIFSRTCRKNEEWSGHLESTNLYKIWKQIKSECENISSETCEKQQESKAKEHTANDANNGIEMIPESDSNKEAEIENDTNKENQMPPEPEASCSYTVNASKTPEDNKIGYIATPERSWKTPEGIQYKRYEDKEKEGYKIPTPFKKILVFPCTPENKPKRRKTIFPAVVSSGKYREYYQHEQQKKLEKNIKTKRTKIPQSREKLNSKNESSSDSEENVQYEDEDLDLSDNEEDLIPGKYVIIFYENEYFPGKILKSDSEGAEVSAMVTAGAGSWKWPIKEDILYYFREDIIKEINEPTLKNNRGHYNVPDMNML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-