Lcap022219.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- clz9
- Assembly
- GCA_949126875.1
- Location
- OX421402.1:6518645-6521746[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-10 3e-08 34.9 0.0 2 42 15 54 14 57 0.89
Sequence Information
- Coding Sequence
- ATGGCGTCAAaagaaaattgtaagaaaaGACGCAGATATTCTGAAAAAGCTCTAGATTTGGCTTTAAACGCAATGAGCAATGGCATGAGTGCCTATCAAGCCTCCAAGGAATACGGGGTACCTAAAAGTAcattaaaagataaaaaaaataaaaaatatgaaaacaaaaaatgcgGGATACAACCTGTCTTAAAAAATACAGAAGAACAATTAATAGTAAAATGGATACATTTTATGGGGGAAGCAGGATTTCCGGTTACAAGGGAACAACTAACAAATTGTGTGACAACTTTGTTAAAGAATTTAAATAGGCCAAATCCTTTTAAAAATGGGATACCTGGAACCCACTGGTACAGAAATTTCTTGAAGCGAAACAAAGACATATCTAAAAGAATTTCCCAAAATCTAACAACAAGCCGTGCTAGTGTAACAGAAGAAAACATAAGAAGTTGGTTCCAAAGAGTTTCAAGTTACTTCGAAGTAAATGGACTTTCAGATGTTTTAGAAGACGAAACGAGAGTATATAATTTGGACGAAACTGCTTTCTTCTTGTGTCCAAAAGACAAACAAGTGTTAGTCAAAAAAGGGTCTAAATCAGTGTACAATCGCACTGCAAATGATGAAAaagaatgtttgacagttttGGCTACAGTTTCTGCAAGCGGAGAGGTACCAATCCCGATGGTGTTGTTTCCTTATACTAGGTTACCTAAACATTTAATTTCAACTATACCAGAAGGATGGGGAATGGGTTATAATGAGAGTGGATGGATGAATTGTGAATCCTTCTACGAATACATAACTAATTGTTTTTATAAATGGTTGGaacgtaaaaaaataaaacttccgGTTGTCTTATTTTTGGATGGCCACACAAGTCATATATCTTTACCTCTAAGTGAGTTTTGTAAGGAAAAAGGCATTATTCTAGTAGCATTGGTACCTAATTCGACGCACATAATGCAGCCGTTAGACGTCGCTGTTTACCGCCCCGTAAAAGGTGCTTGGCGTAAAATAGTTAACGATTTTCGTGTTACGAACaattatggaaaaataaaaaggtcaGATTTTGCACCActagtaaaaaaatgttttgaccAGACTCTTAAAAAGGAAACCattaaaaatgcatttaaatGTTGTGGACTATTTCCCTTCAACCCCAACGCTGTGGATTTccaaaaattagataaaaagaaaattaatctAAATCCAATAGTAGAATCGAAATCAACAGAAAATACGTTAATAAACAATGGATGTTTCAgaacagaatttgaaaataaactttcaCCTACTACCCTTAATCAATTTAGGCAGCAATGGATCGCCAGTGGGACCTGGTCAGGAGATCCAAACTATGAAAAGCTCTACAATTTCTGGTCAACACTATTACCAATACAGAACACGAAATCAGAAATCAAATTGGACTTTGCCGTACATTCTACACCAAATCACTCTCAAGATATTCATTTTGTAGAAAACTCGAACAATACAACACTGGGTAACTTGGGAAATACTACTTTTGTAAATAACTGTGACTTTAATGATTCTGTAATAGATGTGTCAAATGAATGGAAAATATTCACTGTGAAAGATGATGGAAGGTTAGGTTTAGACAAAGAAGAGACAAATAGCCAGAACGATGTAACACCTaaagaaaacgaaaaaataCGTATACTAAAAGTAGAAGTTTTGAAACAAGCAGACAGCCAATGCAGTAACGACAATATAGCATCTGAAGCACTCTCGTTTCCCTCTACTTCTACATCATGTAATTTGTTCAGAGAACTTCATATTGAAGCCAGTGTCGGAAAGGCAAACTTTTCAGCAGATTGCCCATCTGCGATGGAACATTCACCAAAACAATTCTTTAACCTCAATACGTTGGCTGAAGAAATTTCGTTTACCCCTACTTTTACATCATCTAACTTATTTCAAGAACAATATAATGATGTAAGTActgaaaaggaaaatatttcatcatattattaCCCGTCTGCAGCGGAAAGTTCgctaaaacaattttttaacgcAAATACAAGTCCTGAAACAGTTACATTTCACTCTAGATCTACATCATCTAATTTAGTCCAAGATAGTGAAGATAATACTGAAAAAGAAAACAGTACAATATTAAACCCTTCTTTAGCGAAACTCATTTCCAATTCAATTACTTTAACAGTACCAGTAGTTGAGAACAAAGAAGATTTGTTATCTACAAGTGTAACGGATTCCTCAACTACAAAATCGACCACAACATGTGCTATGGGTACTCAATTAAAAGAAACAGATCTCAACACTCAAGAAGTTACTCCTCCATTAAAAACAATCACTAGCAATGTTTTACTTAAAACCACAACGGAAGTAGTATTAAACCGTGCTATAAATGATTCTGTACATCAAAGTCCTGAAGAAAATACTCCTCCATTTAAAATGCCTACACCTTTTAAAAGTGCTTTTTACTTTCCTAAGAAACCGACAACTAATTCTAAAAAAAAGGTATCAAAAAAACTTACACCTACTGTTGCCATATCAGATGAATTTATGGAGTAtcaaaaaagaattgaaatggaaaaagaagaaaaagaagagaaaaagaGACAGAACGCGATaaagaagtctaaaaaaaaGATGCAGAAATCAGATAAGAATGTAAAAATGGGAACTTCTAAATTGTTAATTCAAGACAACCTAAATGGCGAAGAAAACAAAGACACAGGGAATATTAAAGAAGCggaaaaaagtaaattaagaaataaaaatattatagttaATACTGAAACTACCcaaaaatcacaaataaaaaaaaaccaagaatGTCTTGACGAGGTGGACATTATCAATGtaggaaaaaaagttttaaaaaagggTGACAatgtaatagtaatttacgATGGTAAAAACTTTCCTGGTATAATTTTGGAAGAAAGTGAtggaaaatattatgtaaaGGCCATGGAAGCAATTGGCACACATTGGAGATGGCCTAAGACAGACGACATAATCTGGTATGACgctgaaaaaattatttcaactattAATCCTCCAAAACTATTCAATAAAAGAGGACATTATTTAGTGCCAGAATTAAATGTTTGA
- Protein Sequence
- MASKENCKKRRRYSEKALDLALNAMSNGMSAYQASKEYGVPKSTLKDKKNKKYENKKCGIQPVLKNTEEQLIVKWIHFMGEAGFPVTREQLTNCVTTLLKNLNRPNPFKNGIPGTHWYRNFLKRNKDISKRISQNLTTSRASVTEENIRSWFQRVSSYFEVNGLSDVLEDETRVYNLDETAFFLCPKDKQVLVKKGSKSVYNRTANDEKECLTVLATVSASGEVPIPMVLFPYTRLPKHLISTIPEGWGMGYNESGWMNCESFYEYITNCFYKWLERKKIKLPVVLFLDGHTSHISLPLSEFCKEKGIILVALVPNSTHIMQPLDVAVYRPVKGAWRKIVNDFRVTNNYGKIKRSDFAPLVKKCFDQTLKKETIKNAFKCCGLFPFNPNAVDFQKLDKKKINLNPIVESKSTENTLINNGCFRTEFENKLSPTTLNQFRQQWIASGTWSGDPNYEKLYNFWSTLLPIQNTKSEIKLDFAVHSTPNHSQDIHFVENSNNTTLGNLGNTTFVNNCDFNDSVIDVSNEWKIFTVKDDGRLGLDKEETNSQNDVTPKENEKIRILKVEVLKQADSQCSNDNIASEALSFPSTSTSCNLFRELHIEASVGKANFSADCPSAMEHSPKQFFNLNTLAEEISFTPTFTSSNLFQEQYNDVSTEKENISSYYYPSAAESSLKQFFNANTSPETVTFHSRSTSSNLVQDSEDNTEKENSTILNPSLAKLISNSITLTVPVVENKEDLLSTSVTDSSTTKSTTTCAMGTQLKETDLNTQEVTPPLKTITSNVLLKTTTEVVLNRAINDSVHQSPEENTPPFKMPTPFKSAFYFPKKPTTNSKKKVSKKLTPTVAISDEFMEYQKRIEMEKEEKEEKKRQNAIKKSKKKMQKSDKNVKMGTSKLLIQDNLNGEENKDTGNIKEAEKSKLRNKNIIVNTETTQKSQIKKNQECLDEVDIINVGKKVLKKGDNVIVIYDGKNFPGIILEESDGKYYVKAMEAIGTHWRWPKTDDIIWYDAEKIISTINPPKLFNKRGHYLVPELNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910487;
- 90% Identity
- iTF_00910492; iTF_00910487; iTF_00910486; iTF_00910491;
- 80% Identity
- -