Lcap038075.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
clz9
Assembly
GCA_949126875.1
Location
OX421407.1:2054499-2057135[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.7e-13 6.3e-11 43.4 0.1 1 43 8 49 8 51 0.88

Sequence Information

Coding Sequence
ATGACCAAAAGATATCAATACAGTGAGGAAGACATGAAAAAAGCTCTAGAAGCCACTCAAAATGGCATGTCAATCCGAAAAGCTAGTGCGGCTTATAATGTTCCTCGATCTACATTAAGCGATAAAGTTGCAGGAAAAACACAAGTTGGGAGAAAAATTGGTCCAAATTCAGTTTTAACACCTGAAGAGGAAAACCACTTAGTTTCTTGGATATTTAATGCTGCCAAAGCTGGTTTTCCAGTAACAAGTAGTCAGCTGTTTGAGAGTGTTCAGCTTTTGATACGCGAATTAAAACGAGAGAATCCATTTGTAGATGATAAACCAGGCCGTCATTGGTATGAGAGCTTTTTAAGAAGACACCCTGAAATTTCCAAAAGAGTTCCACAAAGCCTGACTGGACAACGATCTAAAGTGACAGAAGAAAAAATACGCCAATGGTTCGATGaggtaaataattatttaaaagaaaatcaaATCAATGTAACCGAACCAAATAGAGTTTATAACTGCGACGAAACGGCCGTTTTCTTGTGTCCCAAAGGAGAAAAAGTTCTAACCAAGAAGGGTGATAAAACTGTATACAGCATGTCAAATAATAACGAAAAAGAAGCAATTACTGTACTTTTTATGTGCAATGCTGCTGGGGATCTGCCACCACCGCTTATTATGTATTCTTATAAGAGACTTCCAAAGGAGGTGATTAATAATGTTCCAAAATCGTGGGGGATTGGCAAGTCAGATAATGGCTGGATGACAGGACGCTCATTTTTTGAATACATAGCAAACGTATTTTTGCCCTGgattaatgaaaaaaacattCCCATGCCGATACTCTTATTTGTTGATGGACATAAATCCCATTTAACAATGCAACTTAGCACGTTTTGCgcagaaaataatattattctaaTAAGCCTCTATCCAAATAGTACACATATTTTACAACCCCTAGATGTGGCAGCGTTTCATCCACTGAAGGTAGAATGGAGAAAATCAGTAATTGATTGGAGAATGCATAACCAAGGCATAAAAATTTCTAGAGAGCAGTTTGCacctttattaaaaaaaactattgatcgAATGGAGGAAAGTCTAAAACAATCAATAAAGAGTGGTTTTAAGACATGTGGTCTTGTTCCATTCAATGCCAACAATATTAAGTTTGTCAAGTTTTTTAAAGATTCTACTACCAACCACTCCCTGCCCAATAACgaagttgaaaaaaatgatgaaagAGTAGCTTTAGCCGTTTTCGAGgagataaataaagaaaacataCCTCTTTTCAAATCGTCAGAGAGGATCTGGAAAGGAGACGTTAAAGATAcaaatcttttttatttatggCAAAAACTCTCTGACTCTGTGAATAATAGATGTCCACAAGAGTTGAATGACACTATAGTATTCGAAACAcatttacaaatacattcaGACACGACTGGAAGTGCGTTCTCCTCTAATTCGCCTAACTTAGATCTAATAACAGAAATTGCAAAATCCAAAGAAGTTTTAGAACTGGATGATAACACAGACTTTGTAAATAATGAATTCTTGCAAGAGTTGAACCACACTGTAGTGTTCGAAGAAAATGTACCTGAACATTCAGAAACTTCCGAACCTGTGTTTTCCACTGATTCTCTTAACTTAAACCTAAAGTTTGAAATTTCGAAAGCCAAAGAAGCCTTACAATTAGATGATAACTCAAAAGAAAATTTGCTTCCAGTTCTGAATTTAACTGACACCAGTAACTTTAATTTCTCAACAGCAGATAtagatttaaatgttttttcaataatttctatTGACGAAGCAGAAAATCAAGGCGGTTCATTATCAAATGTCGATAAAACAACCAGTGACACTAACCGTAAAAAAAACGAGGAAACAAATAACTCTTATGAAACAAACGCCGAAAGCGAGACTGTAGAAAACAAAGATACAGAGAGGGAAGAgcagaaaaaaaatcaacaggGGGATGAAAAGAAAGTAACTGAAGAGGATTTAGAAGacgaaaataaagaaaacacaGATAACAATAGATTCATCCAAGATGTTCTAGAGAAATCTCCCGTCAAACAAATGGAAGAGTTATCAAATATTCCAACTCCTTTCAAGAAAATGGTCTTTTGGATAACACCACCAGAAGAAAAAAAGAAGCAGCTCAGAAAACCGAAAGAAAAAACCCCATCAGTTGTTGTTTCTCAACTCTGGCAGCAATATGAAAAGCGGAAATTGGACAAAAAACAAAACGAACAAGATGAGAAAgacaaacgaaaaaaaattcgCTTGGAAAATAAAGAGAACAAAGTTATGGCTTCAAAAACTAAAGGGGAAAAGAAATGTATTGATCCTAACGCAAAAAGGGTAAAAGAGGTTCAGATGGTAACAAGGTATTTAGTTGGTGACTATGTAATCGTTAAATACAACGAAGCTTGTTATCCTGGGtgtatattaaattataatgatGAAAACCAGGAGTATACAGTTAAAGCTATGACCCTTAGTGGTCAAAACTGGAAATGGCCTGCCAGAGAAGATATTTTAACTTATAAGACATCCGACATaatgcaaaaaattcaaaaaccaaaacttataaataaaagagGTGTATATGAAGTTGCAATgatgaaataa
Protein Sequence
MTKRYQYSEEDMKKALEATQNGMSIRKASAAYNVPRSTLSDKVAGKTQVGRKIGPNSVLTPEEENHLVSWIFNAAKAGFPVTSSQLFESVQLLIRELKRENPFVDDKPGRHWYESFLRRHPEISKRVPQSLTGQRSKVTEEKIRQWFDEVNNYLKENQINVTEPNRVYNCDETAVFLCPKGEKVLTKKGDKTVYSMSNNNEKEAITVLFMCNAAGDLPPPLIMYSYKRLPKEVINNVPKSWGIGKSDNGWMTGRSFFEYIANVFLPWINEKNIPMPILLFVDGHKSHLTMQLSTFCAENNIILISLYPNSTHILQPLDVAAFHPLKVEWRKSVIDWRMHNQGIKISREQFAPLLKKTIDRMEESLKQSIKSGFKTCGLVPFNANNIKFVKFFKDSTTNHSLPNNEVEKNDERVALAVFEEINKENIPLFKSSERIWKGDVKDTNLFYLWQKLSDSVNNRCPQELNDTIVFETHLQIHSDTTGSAFSSNSPNLDLITEIAKSKEVLELDDNTDFVNNEFLQELNHTVVFEENVPEHSETSEPVFSTDSLNLNLKFEISKAKEALQLDDNSKENLLPVLNLTDTSNFNFSTADIDLNVFSIISIDEAENQGGSLSNVDKTTSDTNRKKNEETNNSYETNAESETVENKDTEREEQKKNQQGDEKKVTEEDLEDENKENTDNNRFIQDVLEKSPVKQMEELSNIPTPFKKMVFWITPPEEKKKQLRKPKEKTPSVVVSQLWQQYEKRKLDKKQNEQDEKDKRKKIRLENKENKVMASKTKGEKKCIDPNAKRVKEVQMVTRYLVGDYVIVKYNEACYPGCILNYNDENQEYTVKAMTLSGQNWKWPAREDILTYKTSDIMQKIQKPKLINKRGVYEVAMMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00910456;
90% Identity
iTF_00910456;
80% Identity
-