Lcap049922.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421410.1:27455280-27458113[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-10 2.1e-07 32.2 0.0 3 37 13 48 11 52 0.90 2 2 4.9e-08 1.1e-05 26.6 0.0 2 41 527 566 526 570 0.92
Sequence Information
- Coding Sequence
- ATGGGGAAAAAAGAGCAGAGACAAGTGTGGAATAAAGAGAATATGGAAGCAGCGATAAGCGCTATAAAGTCAAAGGAAATGGGTTGGAAACTAGCGGCTAGAACGTTTGGAGTCCCCAGAAGTACTTTAAAAAGAAGAGTTCTAGATcgtaacaaaattattaaaaatggagaaaaaggaTTTTTTGGTGGCCGTGTTCCTGTTTTTACGCCAGAAATTGAAATGGAGTTGGTTAACCACATACAGATGATGGCCGATAGGTATTTTGGATTAACGTTGACCGATGTGCGAAAACTTGGATTCCAACTagctgaaaaattaaaaataaagcacCCTTTTAACAAGGAAACCCAAATGACTGGTTGGGATTGGGCACATGGACTTATAAAACGGCATGAAAATCTTATTTCTTTGCGGATACCTGAAGCAACCTCGCTCGCCCGTGCACAGGGGTTTAATAAACCTGTAGTTGAAAAGTTTTTTGAACAGCTAAACgtaataattttggaaaataactTCAAACCGGATCAAATATTCAACATGGACGAGTCAGGTTTTTCCACAGTCCAGTCAAGAACTGAAAAAATCTTGGCGGTACGAGGAAGAAAGCAAGTCGGTACACTGACAAGTGCCGAAAGGGGTGTTCATTTTTCTGCAGTGTGTTGTGTTAATGCAATGGGAAATTTCGTACCTCCTGCGTTGATTTTCCCAAGGAAGAACATGAAAAATGAACTCATGGACAAGGCTCCTATTGGCTCAGTTGGATATGCCAATGAAACCGGTTACATGACTGGAGAAGTATGCCTTAAATGGCTTCAACATTTTAAACAGTTTGCAAATCCTTCTCCGGAAAGAAAAATTCTACTTTTATTAGATGGCCACTCGAGTCATAAAAATTTGCAGGTGTTAGAGTATGCCAAGTCcaacaatataattttattcTGGTTTCCGGCTCATTGCACTCATCGCCTACAGCCTTTGGACGTATCGTTTTATGGGCCACTTACGACCTATTACAATCAGTCGATAAGAAGTTGGCTTAGGGCACACCCTGGACGTGTTTTGAGTCATTATCAAGTGGCTCCCGGTTCTCCTGAAGAAAGTGCTTCTGCTGCTCCTGTTGAAGCTCCCGGTGAACAAGTTCCAGAGTGTATAAACAAAGATGTTCTTGAGCCAGAAGAAATTGCTAATCCGTCAACATCAAAACCATCCTGCAGCGCGTCAGGGAAAATAGTTGAAATAATCCAAAACTTATCACCTTTGCCGACGGTGGAAAAATCTAAAGGGAAGAGAGTTCAAAGAAAAAAGGGAAAATGCGGTGTTATAAATTCGACCCCAGAACTAgaggagataaaaaaaaaccaaaggCAAAAAAGGGAAGTAGAAGAGAGGAGGGCAGCCAAAAGGGCAAAAAATAACTTAACAAACTTGGAAACGGAAGAAACAAGTCAAGAATTTCAGGAAAGTGATGAAGACGAAGATCCTGCCTGCATTTACTGCAATGGATTATATACAGAATCCAGACAAGACATGGTACGTAACTGTAAACGTGAAACTACTAGAGCCTCACAGTTTTCACAGGAGTCTCTAGCAAATGccgttgaagaaattaaaaatggtaCTTTACCTATTTATCGTGCACATAGAATTTACAATATCCCCAAAACTACCCTCTTCTATCATCTGAAGGAAAGCAAGGGAAAGAAGAGTAAAAGCCAAGGAGGGGCAGCTACAATTTTATTAGTAGATGAAAGAAAGTTGGCTAATGCACCAAAAACGATGGCAAAATGGGGCTTCGGAATTACGAGAAAAGAAGTCCTCCACATTGTTTGGCAATACATCACTGTCAATAACATAACAACACCGTTCAAAGATGATACTGCGGGGGAGGAGTGGTTTTTAAAGATTAGGGTTTCTAATGCGCTGTATTCGATTTGA
- Protein Sequence
- MGKKEQRQVWNKENMEAAISAIKSKEMGWKLAARTFGVPRSTLKRRVLDRNKIIKNGEKGFFGGRVPVFTPEIEMELVNHIQMMADRYFGLTLTDVRKLGFQLAEKLKIKHPFNKETQMTGWDWAHGLIKRHENLISLRIPEATSLARAQGFNKPVVEKFFEQLNVIILENNFKPDQIFNMDESGFSTVQSRTEKILAVRGRKQVGTLTSAERGVHFSAVCCVNAMGNFVPPALIFPRKNMKNELMDKAPIGSVGYANETGYMTGEVCLKWLQHFKQFANPSPERKILLLLDGHSSHKNLQVLEYAKSNNIILFWFPAHCTHRLQPLDVSFYGPLTTYYNQSIRSWLRAHPGRVLSHYQVAPGSPEESASAAPVEAPGEQVPECINKDVLEPEEIANPSTSKPSCSASGKIVEIIQNLSPLPTVEKSKGKRVQRKKGKCGVINSTPELEEIKKNQRQKREVEERRAAKRAKNNLTNLETEETSQEFQESDEDEDPACIYCNGLYTESRQDMVRNCKRETTRASQFSQESLANAVEEIKNGTLPIYRAHRIYNIPKTTLFYHLKESKGKKSKSQGGAATILLVDERKLANAPKTMAKWGFGITRKEVLHIVWQYITVNNITTPFKDDTAGEEWFLKIRVSNALYSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -