Lhal018417.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000052.1:1558502-1560976[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1 2e+04 -7.8 5.6 15 19 135 139 134 139 0.81 2 16 0.0072 1.4e+02 2.7 0.7 4 10 170 176 169 176 0.97 3 16 1.6e-07 0.0031 17.6 15.9 3 19 187 203 186 203 0.95 4 16 2.5e-08 0.00051 20.2 13.0 3 19 240 256 238 256 0.91 5 16 1.1e-09 2.2e-05 24.5 12.7 1 19 291 309 291 309 0.99 6 16 9.9e-07 0.02 15.1 19.8 3 19 346 362 338 362 0.86 7 16 3.3e-05 0.66 10.2 20.3 1 18 396 413 396 414 0.97 8 16 7.2e-09 0.00014 21.9 17.3 1 19 423 441 423 441 0.99 9 16 0.0098 2e+02 2.3 5.0 9 19 489 499 487 499 0.88 10 16 0.001 21 5.4 8.6 1 12 509 519 509 519 0.96 11 16 0.18 3.5e+03 -1.7 3.3 14 18 548 552 548 553 0.85 12 16 0.1 2e+03 -0.9 0.1 8 12 569 573 568 574 0.82 13 16 6e-06 0.12 12.6 4.2 1 11 589 599 589 600 0.97 14 16 0.00025 5.1 7.4 13.4 1 18 629 646 629 647 0.88 15 16 1 2e+04 -5.1 2.4 9 13 653 657 652 657 0.74 16 16 7.5e-06 0.15 12.3 9.8 1 18 688 706 688 707 0.87
Sequence Information
- Coding Sequence
- ATGGCGCGTCGATATAAAGATGCGGCCGCAAAACTGCAGCAAAACGTGCAAAAACATTTGAAGGAAATGAAAGATCTATCATCCTCTGAAGATGAGGAGCCCTACGAGTCCAGCGTCATCGAGGGCATGTTCCAGAGCTACTGGCGAGGAGGTGGCGATACCCAAATGCTGAACAGAACCAAGAATCTTCTAGAAGAAGCTATAAGCGGGCGGTCAGTAACCTGTCTCATCTGCATAGGTTCGATCAAACGGAACCACTCTATTTGGACGTGCAATCACTGCTACTCATACTTTCACCTCTCCTGCATCCAGAAATGGGGCAACGACAGCATAAACCTGCTTTCTATCGAAGAACCGCGCGGCCCTATTAGCGTTTTCAAAGCCAGAAAGATTGAGTGGTGCTGCCCAAAATGCCGCAACTCGTACAGTAAGGAGGAAATACCCAGAAAATACAGGTGCTTCTGTGCCAAAACTGATAACCCTCAGGTACATCCTTGGTTGATACCCCACACTTGCGGAGAGGTTTGTGAGAAGAGGCTGTCAATCGGAGACAACTGTAAACATAAATGTCTGTTGCTGTGCCATCCTGGACCATGTCCACCCTGTCCTCAAATGGTCAACGGAATATGCTATTGCCAAAAAGAGCGGAAGAAAGTCCGGTGCAGTGCTGCAAAGTGGTCATGCGGCCAGCAATGTAAGAAAACCTTACTCTGCCAGACACACAAATGTGAATTACTCTGCCATGATGGAGAGTGTCCTCCTTGCACCTACACAAGCCTCCAACCATGCTTTTGTGGAGCTGAGAAGACTAAAAGACCATGTGACGATCCATTTTGGCACTGCAAAAAGGCTTGCTACAAACCATTTTCATGTGGCTACCATAAGTGTGAAGTGGTATGCCATTCAGGAGAGTGTGGTGAATGTCCTAATACTGGGATGAGGTCATGCCCTTGTGGAGCAAATCAAAGATATGTCCAATGCCCAGATACGCTTGAAACCTGCCTAGGAACTTGTGGAAAGCAACACAATGACTGTGAACATACCTGCCCAGAAAAATGCCATAAAGGCCAATGTCCTCCATGCCAAGTCTTAATCCAAAAGAAATGCCTCTGCTCTACTCACACCAGATCCCTTCCTTGCAGCAAAGACTTTAAATGTGATACCAAATGCCGAGGGACCAGGCCTTGTGGAAAACATGGTTGTGGACGAAAATGCTGCAATGGCAACTGCCCTCCGTGCGAAAAGACTTGTGATAAACCCCTACAGTGCGGGCGCCATAAATGCACCACAGTCTGCCACCACGGTCCATGCTACCCTTGTCCCTTGGAGTCCAAAATAACCTGCAAATGTAAAGAGACTTATGTGACTGTTCCTTGTGGTAGAGAACGGTTTACGAAACCCCCAAAATGCAGTCTTCCTTGCAAAGTAAAATACAAATGTGGTCATGCAGATGAGAACAAACATTCCTGCCATTTTGCAGACTGTCCTCCATGCAAAGCTATCTGCTACAAAACTTATCCAAAATGCGGTCATGAATGCAAAGCAACTTGCCATGAATATAAAGCAGTTGTGTTTAAACAGATTGAAAAACCAGCCACACCCTGGGAAGTCCAGGCTCCAAAAACCAAGATCATGACGTTAGAATGTCCGCCGTGCAACATGCCAGTATCTGTCATCTGTTTTGGAGAACATGAAACAGACAACCAACCCTGTCATTCTGCCACTAGAAGACCGTGCGGCAGAGAATGTGGGAAACCATTAGCTTGCGGCAACCACAGCTGTTCGTTACTCTGCCATTTGTACCAACCTGATGGAAACTATCCTAATGTGCCTTACAACTGTAAGGCTTGTAACAGGGAATGTGTTAAACTCCGTCCAGAAAAGTGCTCACATAAATGTTCTATTCGACAATGCCACCCTGGGGAATGCCGTCCTTGTGAAATACTGGAAAGAGTCCCATGTCATTGTGGAGTCACAGAACTATACCTTCGCTGTAGAGAATATTCCTCTGCTACTGAAGAAATGCTGTCTTGCAAACAGCAATGCCCAAAGAATTTAGAATGTGGCCACCGTTGCAGAAACACATGCCATATGGGCAGCTGTGCTAATCAAGTCTGCACTAAAAAAACCAAGATACATTGCCCTTGTGGCAACTTGAAGAAAGAAGTGGCATGTAATACTGTTAAAAGTGGTGAAGCTAAGGTTGTATGTGACGAATCATGCGAAGTTAAAAAAACAGCTGCTAAACTTGAGAGTGAGAAGGAACAGCAGAGGTTGAAGCTGTTAGAAGAGGAAAGGAATAAGAAAGAACTGGCTGAATATGAGTGGAAACTCAGCGGTAAAAAGAAGAAGTATAAAGAAAAGAAGGTTGTGATCAATAAGGATGATCGAAACTGGTTCCTCAGGCACTGGATGCTGCTTGTGTCCATTGGTGTAGCAATGATGGCTGTGGCATTCTTTACTATTTATGCTTAG
- Protein Sequence
- MARRYKDAAAKLQQNVQKHLKEMKDLSSSEDEEPYESSVIEGMFQSYWRGGGDTQMLNRTKNLLEEAISGRSVTCLICIGSIKRNHSIWTCNHCYSYFHLSCIQKWGNDSINLLSIEEPRGPISVFKARKIEWCCPKCRNSYSKEEIPRKYRCFCAKTDNPQVHPWLIPHTCGEVCEKRLSIGDNCKHKCLLLCHPGPCPPCPQMVNGICYCQKERKKVRCSAAKWSCGQQCKKTLLCQTHKCELLCHDGECPPCTYTSLQPCFCGAEKTKRPCDDPFWHCKKACYKPFSCGYHKCEVVCHSGECGECPNTGMRSCPCGANQRYVQCPDTLETCLGTCGKQHNDCEHTCPEKCHKGQCPPCQVLIQKKCLCSTHTRSLPCSKDFKCDTKCRGTRPCGKHGCGRKCCNGNCPPCEKTCDKPLQCGRHKCTTVCHHGPCYPCPLESKITCKCKETYVTVPCGRERFTKPPKCSLPCKVKYKCGHADENKHSCHFADCPPCKAICYKTYPKCGHECKATCHEYKAVVFKQIEKPATPWEVQAPKTKIMTLECPPCNMPVSVICFGEHETDNQPCHSATRRPCGRECGKPLACGNHSCSLLCHLYQPDGNYPNVPYNCKACNRECVKLRPEKCSHKCSIRQCHPGECRPCEILERVPCHCGVTELYLRCREYSSATEEMLSCKQQCPKNLECGHRCRNTCHMGSCANQVCTKKTKIHCPCGNLKKEVACNTVKSGEAKVVCDESCEVKKTAAKLESEKEQQRLKLLEEERNKKELAEYEWKLSGKKKKYKEKKVVINKDDRNWFLRHWMLLVSIGVAMMAVAFFTIYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857272;
- 90% Identity
- -
- 80% Identity
- -