Lhal009217.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000020.1:1163793-1177191[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00046 0.027 15.1 1.7 2 23 369 391 369 391 0.91 2 9 1.1 66 4.4 0.1 2 10 397 405 397 416 0.89 3 9 0.0044 0.26 12.0 6.8 1 23 450 472 450 472 0.98 4 9 4.1e-05 0.0024 18.4 0.2 2 23 479 501 478 501 0.95 5 9 0.016 0.93 10.2 1.2 2 23 1372 1394 1372 1394 0.92 6 9 0.66 38 5.1 0.5 2 18 1400 1413 1400 1419 0.72 7 9 0.019 1.1 10.0 1.6 2 23 1426 1447 1425 1447 0.96 8 9 0.29 17 6.3 5.9 1 23 1453 1475 1453 1475 0.82 9 9 4.1e-05 0.0024 18.4 0.2 2 23 1482 1504 1481 1504 0.95
Sequence Information
- Coding Sequence
- ATGAAGAAGCTGGGCCTTCTAGAAACGGAAGAAGACTTCAAACTGGATGATTTTGGGGACCCGTGGATTAGCTGCCAAGCTGACATCAATAAACTAGTGGAGTTGAAACGAAATAAAACTAAGTCAAGTGAAGCCCAGCCCAAAGACGAAAAAAATGAACCGATTGATGAAAGTGACAAGCCGAACAACATAAATCAACCAATTGATGTTAACGTCCAACCAATCGGTGAAATAGGATCGCACTACGGTGATGCAGATCAGCTAACCGATGAAAAAGACGATAAAGAAAGAGTACTTATTGAAATAAACCAACTAATTAATGAAACAAATCAACCAATTGATGAATTATATCAAGAGGAATGCATTCCGAGAAAAAACATATGTTCCGAAAGATTTAACCATGAAATAACTTGGTGTCTTCCGCCTGACGTTGCAGTGGAGGCCCAGTGCAGCGGCTGCCTCGCGCTGGGCGCCGGCGAGCAGGCGGCCACCATGCTGGAAGAGTGCTTCGGCATACAGGTAACTACTGCTGGCGGCTCGCTTTGGCATACAGGTAACTACTGCTGGCGGCTCGCTTTGGCATACAGGAAACTACTGCTGGCGGCTCGCTTTGGCATACAGGCGGCGGGCGCGCTGCTGTGCGGCGTGTGCGCGGCACGACTCCGCGACGCGCTGCGCTTCAAGCGCGCCGTGGTCGCGAGCCACGCGCAGCTCACCCGACACCCGCCGCCCTGTGCTGGCAGCGCACCAGCTGCCGCCGTTATAAAAGAAGATGAAGATTTACCGCCTGAAGGTGATGCTTGCGACCTTTCGACAGTGGATGAGTCGCCCGATGATTCTGAATTAACCATCGAAGGATCGGACATCCCTTTTCTACTCAGAACAAAGCCCTTTGCACAAGTGGCACCAGACAAAATAGTCGAAAAGCCCAAAAATAAAGTGACCCCGTGTCCAAAGAAGTATGTCCCTGCTGGAGCCTGGAAGAAAAAAGCGGCTAAAATCTATTACACACAGCTCGGGGACAGCTATGCGTGCAACTATTGCGAAGCGATCGTAAACTTTGACCACATCCTGACACACCGACGCAACTTTCATGGACGCGCCAAGTGTCCATTTTGCGTAAAGAATTTCAAAACAAAAAAAAATCTAATAAAACATAAAATCGACGAACACGGCGTCGACGACAACAGATGCAACGTGTGCGACAAGAGTTTCTTAAATATAAGTGCTCATATGGATGGTGTTCACAAGTTAGGGCAAAAGTGGAAGTGCACTGAGTGTGATTTTGAGTCTTACGCAAAGAACGGTCGTAGAAGACATAAAGCTGTACATGCACGTGAAAAGAAGTTTAAATGTCAATATTGCGATAAGTCGTTTGTGCATCTTAGTAACTGTCGTTACCACGAACGGATCCACACGGGAGACAAGCGGAAAGTTTGTACCGAGTGTGGACAAGCCTTTGTGCAAAAAGCGAGTCTTAACTATCACATGGCCAAGTACCATCCTAGCGTTAGAATGAAGAAACTGGGCCACCTTGGAACAGAAGAAGACTTCAAACAGGATGATTTTGGGGACCCGTGGCTTAGCTGCCAAGCTGATGTCAATAAATTATTGGAGTTGAAACGAAGTCAAACCGAGTCAAGTGATGATAACGCCCAGCCCATAGACGAAAAAAATGAACCGATTGATGAAAGTGACAAGCCGAAAGACATAAACAAACCTATTGATGTTATCACCGAACCAATTGCAGTTGGTGAAATAGGATCGCACGACGGTGATGCAGATCTGTCTACCGATGAAGAAGACGATAAAGAAAGAGTAGTTATTGAAATAAAGCAACACATTTATGAATCAAATCAACCAACGGATGAATTATATGAACAGGAATACATTCCGGGAAATAACATGTTTTCAGAAAGATTTAAACATCAAATAACTTGGCGTCCCCCGCCTGAAGCTGTAGTGGAGGTTCAGTGCAGCGGCTGCCTCGTGCTGGGTGCCGACGAGCAAGTGGCGACCATGCTGGAAGAGTGCTTCGGCATACAGTTAGTTGACATTCTATCAATATATAATTTTATTCAACTGGTTGACTTCCCCACTCGAGTAGAAGGGGAAGGGGGCAGCAGTACGCTCCTCGATCATATCTACACTAATATACCTGAGGAGCGCGTAGCTGGCCCTGCCACCTGCGTCGACACGCACCTTAGTGACCACAATGCTCAGCGTTTGACGATATTGAGGAAAGTACCTAACGTACCTAGTTTCAGATTAATGCGCAGCTACAACTCGGCCAATCGCGATAACTACGTGCGCTCACTCGATTCATTCGACTGGGTCGCACTATTAGATAAATCGAGTGGATGCTGCCACCTACTTGCTGAGTCCTTAATGAATATACTCACGTATAAATTCGACATCTGTTTCCCCCTTAAGAAACAGCCCGTCTCTCTTGGTAAACAATGGGTTGACGCAGAGACGCACGACTTAAAATATCTCCTCTTCGATATTATATATTTAAAAAAGCTCTTTCCAAAAAATGATGCTATTATTAGTAAGTTCGAGGACTATTCTATTAAGTACAACAAACTACTTACCGTAAAACGCAGAAATTATTACTCTAACCTAATCTATGATAATCCGAATAAGTCAAAATGTATGTGGCGTATAATCAATGCTGAGTTAGGTCGAAAGAGTCGTGAAAAGGTTGACTATACAGATATTATACGAGACGATAGCGGCCAGCCCTACGCGGCTAAGAAAAACCTGGTTGACGCGCTAAATCTGGAATTCGTGTCGGCAGCGAGTAGGTGCGGCGCTCCAGCAGCTGACAGCCAGCGCGCTATTGCTACGATAGTGGTCGAAAATAAGCCCAGCGACATCTCCATGAGAATAATGCCATTCACCCCACTTGAAGTATTCGAAATTGCCACCAAAAATATTGCCCCTAAAAATAGTACTGATATTTATGGAATATCCGCTAGTATAATAGGAGTTGCTATAAAACCTATAGCATGGATCGTTAGTGGTTTGTTTAACATTGGTGTACGCAGTGGCATTTATCCCAATGCACTGAAAAAGGTGAAAATTAGCCCCCTTTACAAAGGCAAAGGTAAAAAGAGTGACATGAGGTCgtaccgccctatatcgctcgtcccagcggtgagcaaaatatttgaggtagggctaaacaagagaatccttgcgttcataagtaggcaggatatattgtcgagtaggcagtatgcgtaccggccaggacgcgccacgaccgacctggtgcgcgaggtagtatggcaggtgctgagcgcgcgtgaggcgggccagcacgtcgcgctgctgtgctgcgacctctcacgcgcgttcgacaccgccgaccacgccctcattgctgaaaagttacgattctatggaatccgaggaccagcaacaaccttatTAACCACCTTCATGTCAAAACGGTCTCAAGTAGTAGTAGGTGATGGCGGGCGTGTGTCCTCTGAAGAGCTGGAAAACGTGATGGGAGTGCCACAGGGATCCTGTCTATCTAACACCCTGTTTAGTCTACTTCTCAATGATCTGCCCGCTGCTATTGAAAATGCGgagatatacatgtatgctgatgatgtggcgggaGTGGCGGGCGCGCTGCTGTGCGGCGCGTGCGCGGACCGCCTCCGCGATGCGCTGCGCTTCAAGCGCGCAGTGGTTGCGTGCCACGCGCAGCTCGGCCGACACCCGCCGCCCTGCGCTGACGCTCCAGCTGTCGTCGTAATCAAAGAAGAGGAAGATTTACAGCCTGAAGGTGATGCTTGCGACCTTTCGACAGTGGATGAGGCGCCCGCCGATTCTGAATTAAACATCGAAGGATCGGACATGCCTTGTATACTCAGAATAAGGCCCTTTGCACCAGTGGAACCAGACAAAATAGTCAAAAAGCCTAAAAAGAAAGTGACCCCGGGTCCAAAAAAGTATGATCCTGATGTACTAGCGAAGAAAAGAGTGGCTAAAGCCCATTTCACACAGCTTGGGGACAGCTATGCGTGCAAATATTGCGAAGCCATCGTAAACTTTGACAACATCCTGACACACCGATACAACTTTCATGGACACGCCAAGTGTCCATTTTGCGTCATGGGGTTCAAAACAAAAAAAAAACTTATAAAACACAAACTCGACGAACACGGCGTCGACGACAACAGATGCAACGTGTGCGAAAAAAGTTTCTTCAATTTAAGTGGTCATATGGATAGTGTTCACAAGTTAGGGCGAAAGTGGAAGTGTACTGAGTGTGATTTTGAATGTTACTCACAGATGGGTCTAAAAAGACATAAGGCTGTACATACACGTGAAAGGAAGTACAAATGTCAATATTGCGACAAGTCGTTTCATCATGAAAATAACCGCAGGTTTCACGAACGGGCCCACACGGGAGACAAGCGGAAAGTTTGTACCGAGTGTGGACAAGCCTTTGTACAAAAAGCGAGTCTTAACTATCACATGGCCAAGTACCATCCTAACACTAGGATTTGTGACAGCCCCGTTCCTGAGATATCAGCGAAAATACCTGGCCCACGGTTCTGGATCCAGAACCCTGTGGCCAAGTACTTTTGCAAATAA
- Protein Sequence
- MKKLGLLETEEDFKLDDFGDPWISCQADINKLVELKRNKTKSSEAQPKDEKNEPIDESDKPNNINQPIDVNVQPIGEIGSHYGDADQLTDEKDDKERVLIEINQLINETNQPIDELYQEECIPRKNICSERFNHEITWCLPPDVAVEAQCSGCLALGAGEQAATMLEECFGIQVTTAGGSLWHTGNYCWRLALAYRKLLLAARFGIQAAGALLCGVCAARLRDALRFKRAVVASHAQLTRHPPPCAGSAPAAAVIKEDEDLPPEGDACDLSTVDESPDDSELTIEGSDIPFLLRTKPFAQVAPDKIVEKPKNKVTPCPKKYVPAGAWKKKAAKIYYTQLGDSYACNYCEAIVNFDHILTHRRNFHGRAKCPFCVKNFKTKKNLIKHKIDEHGVDDNRCNVCDKSFLNISAHMDGVHKLGQKWKCTECDFESYAKNGRRRHKAVHAREKKFKCQYCDKSFVHLSNCRYHERIHTGDKRKVCTECGQAFVQKASLNYHMAKYHPSVRMKKLGHLGTEEDFKQDDFGDPWLSCQADVNKLLELKRSQTESSDDNAQPIDEKNEPIDESDKPKDINKPIDVITEPIAVGEIGSHDGDADLSTDEEDDKERVVIEIKQHIYESNQPTDELYEQEYIPGNNMFSERFKHQITWRPPPEAVVEVQCSGCLVLGADEQVATMLEECFGIQLVDILSIYNFIQLVDFPTRVEGEGGSSTLLDHIYTNIPEERVAGPATCVDTHLSDHNAQRLTILRKVPNVPSFRLMRSYNSANRDNYVRSLDSFDWVALLDKSSGCCHLLAESLMNILTYKFDICFPLKKQPVSLGKQWVDAETHDLKYLLFDIIYLKKLFPKNDAIISKFEDYSIKYNKLLTVKRRNYYSNLIYDNPNKSKCMWRIINAELGRKSREKVDYTDIIRDDSGQPYAAKKNLVDALNLEFVSAASRCGAPAADSQRAIATIVVENKPSDISMRIMPFTPLEVFEIATKNIAPKNSTDIYGISASIIGVAIKPIAWIVSGLFNIGVRSGIYPNALKKVKISPLYKGKGKKSDMRSYRPISLVPAVSKIFEVGLNKRILAFISRQDILSSRQYAYRPGRATTDLVREVVWQVLSAREAGQHVALLCCDLSRAFDTADHALIAEKLRFYGIRGPATTLLTTFMSKRSQVVVGDGGRVSSEELENVMGVPQGSCLSNTLFSLLLNDLPAAIENAEIYMYADDVAGVAGALLCGACADRLRDALRFKRAVVACHAQLGRHPPPCADAPAVVVIKEEEDLQPEGDACDLSTVDEAPADSELNIEGSDMPCILRIRPFAPVEPDKIVKKPKKKVTPGPKKYDPDVLAKKRVAKAHFTQLGDSYACKYCEAIVNFDNILTHRYNFHGHAKCPFCVMGFKTKKKLIKHKLDEHGVDDNRCNVCEKSFFNLSGHMDSVHKLGRKWKCTECDFECYSQMGLKRHKAVHTRERKYKCQYCDKSFHHENNRRFHERAHTGDKRKVCTECGQAFVQKASLNYHMAKYHPNTRICDSPVPEISAKIPGPRFWIQNPVAKYFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -