Lhal012239.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000029.1:1001099-1022216[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.2 3.6e+02 2.1 0.2 3 11 304 312 303 314 0.84 2 12 2.5 1.5e+02 3.3 0.0 2 23 473 494 472 494 0.89 3 12 0.015 0.88 10.3 0.0 1 23 504 527 504 527 0.94 4 12 0.15 8.6 7.2 3.7 2 21 609 628 608 629 0.93 5 12 0.054 3.1 8.6 3.7 2 23 661 682 660 682 0.95 6 12 0.012 0.69 10.6 1.6 1 23 693 716 693 716 0.91 7 12 2.7e-05 0.0016 19.0 0.4 2 23 723 746 722 746 0.97 8 12 0.051 3 8.6 0.2 1 23 752 774 752 774 0.93 9 12 0.0064 0.37 11.5 1.8 1 23 780 802 780 802 0.98 10 12 4.6 2.7e+02 2.5 0.0 2 20 813 831 812 833 0.87 11 12 0.05 2.9 8.7 0.1 1 23 910 932 910 932 0.97 12 12 1.5 89 4.0 7.2 1 23 939 961 939 961 0.95
Sequence Information
- Coding Sequence
- ATGTCTTGTTGTATTCTGATCAGTTCCGGTTTAAACTCCATCAAAAAATTTAAAACTAAGTCTGCACTGGGCTACGATATCGACTTGAATTCACTAACCAAAAACCAACCAATTGAAATGAACGAAAACATGTACCAATTCTTGATTAACTTAGAACTGAACGACCCAGATTTGGTGCAAGCTTATGGCATAGACTCTGACAGACTACAATCCCTCGAGCAAATCGGTAAATATGACGAATCAGAAGATCAACACAGATATGACCAACCATCAGACGATCAAAGATATGACCGAGCAGGTGATCAGACCCAATATGACCAATCCGTAGACATCAACGATGATCAACTTTACGTCCTAGATGACGGCACTCAAATAAGAGCCTCTCAGATACATTTCGACAATGAAGATGCGCCTTTAGACCTATCTCTTGAACAACTGCCTTTCGTTAAAGTGAATGATGAAGAGGATGACGTCACTTGTGACGTATTCGAAGATGTAACCCACAAAATCATAGCCAGTCCGGTTCCCACAACAAACAGTAGCCCAAGACACGGTTTTATAAACCACGTACCTTTCAAACTAGTCTGTAATAACACCACAGGTTTTGAAGCTCAGTTTACGAAATACCTAGAAACTAGCACAAAAACTTACGCTACCCTAAGTACTGTGACCAAGAAAAACAAATCTCCCAGGAGTTTGATTAGAGAGAACTTTAATGATAAAGAAGAGTTCAGATACACTCGTGAAGAAATCCTAAACATGCTAAAAGACTCACCGGTGACCAGTATACCATATGAAAACAATGAGAAAAAACACGTCAGAAAGACTGACCCGACCAAAATTCAGAAAAGTACAACGAAAACCTTAGATATAGAAGGCTTAGTTATCGGTGATGGCGGGAACAGAAACTGTTCTATCTGTGGCAAAAACGTGAGCAATGATAAAATATATCTATTCGATAAGGAAGATCAAAAGATACATAAATTCTCGCCGCAGAAGAAAATGTCTACACAACTGAAAATTATATGCGAAACATGCCTGAACGATAACTTCAAGCCGTCTCGAATGAAAGGCGCAAACCAATTCCTGAATTCAGACGAATATCTAGTGATACGAAATAACCAGCAATACATATTCCAGAAAACGAAGAATTTTAAATTTAGGACGGACATAGACAAGAAGATAAAGAAGGATGAATTTGTCAAGTTTGAAATTGGGTCTGATGGAGAGATAGTTACAAAGCCTGTTGATGACGATGTGGTTTTGGTGCATGACGGAAGGAAGGATAGCTCTAGTGATGTTGAAATAGTAGAAGCGGAAACGGAAGTGGACAAAATCATAGACAATTTGGAGGAAGCGGATGAGCATGTGATGGTTTTTTTGGGAAAGTATGAGGGAGATGCTTTTGATGAGCTCAAATGCAGGTTCTGTCAGATAATATTCCCTTCAGTATCTGAAGTGATCGACCACGGCTCGGCTCATAAGCACGACTTAGAAGATGATGTCGTGTTCCCGTGTCCTCTTTGCGACTACGGATATGCTACCTTTCAATGGTTGAGAGGACATATATTGGCTGCTCATGATAAGACGAAGATAAAACATGAATTGGACAAAGGTAGCTCTGTGAACATTTCTGGGGAAACAGAGAATTTGGATTCTAATGAAACGAATGCACCGGATATTATAATCAAAACGGAAGTAAAGCAGGAGGCAGTCAGTAGTGACGACGAGATATGGATCGTGCAGACCGGAGACGAGGAACCCTCGCACTTGACCCAGATATTAGAAGCTGCTAAGGTTGAAAATAATGAAAATAGAAGAAAGAGGTGTCATGGATGCAGTCAAATGTTTCCAACAACACACGCGCTTTCTGCCCATAAATGTAGAAGTGGGTCGAAAAGACGATCGGACGAAACCGTTATACCTAACGAAGATGATTTCATAAGGCGGGAGCGTAGAGAGGGATCCCCACAGCGGGTGACGTGTCACAACTGCAATGAGTCGTTCAATTCTAAAGTGCGCCTTAAATTTCACATGCAATTCCACGAGTGTACACCGATGCTGACAGACGGACAGTACAACTGTACGCAGTGTGGAGGTACCTTCGCCACCGAGACGCAGCTCTTCGATCACGTACACTTCACCCACGAGAAGACCCGACGTTGGCAGTGTCCCGTTCAGGATTGCGGGAAGACCTTCTATTTGAGGGCAACCCTAACCAAACACAGTCGCACGCACACAGACACGCGTAGGTACGTGTGTGTGACGTGTGGGAAGAGGTTCCTTGACAAGCAAACCCTGGACGAACATGGCGTCACGCATCTGCAGATAAAGCCATACCAATGCCACATCTGCCTGAAGCAATTAACCCGTGTCTCCCGGCTGAGGATGCACGTGCGAGCTCACGAAGAGGAGCTGGCTCCCACCCTGCTGCTGGTCTGCAGAGCCTGCCGCCGGGCCTTCAGGGACGCCCAGGAGGCACAGGAACATGCACAAAAATCAACGGATTGCATCGAAACAATAGCTGGGGAATTGAAGACGGAAGAGGAAACCGCCATACAACTGTCGCCCACCAGCGGAATCGTGCGGCAGACCATTCAAGTTATCGAGTGTCCGTCCCCGCAACGCTTGGAGCGGCAGGTTTCGTCCCCGATAGCCGCGCCTCTCCTCTCCGATCTCTCCGAAGAAGCGATACAACTCATCAGAGTCGTGGAGGTGGAGAAAGCATTCCGGTGTGAATATTGTGAAGATGTGTTCTACATAGAAGATGCTTTGAACAACCACCGCGCTATACACAAGGGCGTAAAGCACCCGTTTACGTGCCACATCTGTAAAGTGAGCTTCGCTACTTATTCAAGATGTACAACACACAAGACGACGCACGGCTTCTACAAGAAGCGGCCGGCCACTTCCGGCGCAGTGGTGGGGTACGGGGACTTCCCCACCGTGAAACACTTCCTGTGTGAATGGCCCTCGGTCCACGTGCACACGCGCCTTCCGTATTTTTATAAACAAATGTCGAAAGATTTTAAAAACTAA
- Protein Sequence
- MSCCILISSGLNSIKKFKTKSALGYDIDLNSLTKNQPIEMNENMYQFLINLELNDPDLVQAYGIDSDRLQSLEQIGKYDESEDQHRYDQPSDDQRYDRAGDQTQYDQSVDINDDQLYVLDDGTQIRASQIHFDNEDAPLDLSLEQLPFVKVNDEEDDVTCDVFEDVTHKIIASPVPTTNSSPRHGFINHVPFKLVCNNTTGFEAQFTKYLETSTKTYATLSTVTKKNKSPRSLIRENFNDKEEFRYTREEILNMLKDSPVTSIPYENNEKKHVRKTDPTKIQKSTTKTLDIEGLVIGDGGNRNCSICGKNVSNDKIYLFDKEDQKIHKFSPQKKMSTQLKIICETCLNDNFKPSRMKGANQFLNSDEYLVIRNNQQYIFQKTKNFKFRTDIDKKIKKDEFVKFEIGSDGEIVTKPVDDDVVLVHDGRKDSSSDVEIVEAETEVDKIIDNLEEADEHVMVFLGKYEGDAFDELKCRFCQIIFPSVSEVIDHGSAHKHDLEDDVVFPCPLCDYGYATFQWLRGHILAAHDKTKIKHELDKGSSVNISGETENLDSNETNAPDIIIKTEVKQEAVSSDDEIWIVQTGDEEPSHLTQILEAAKVENNENRRKRCHGCSQMFPTTHALSAHKCRSGSKRRSDETVIPNEDDFIRRERREGSPQRVTCHNCNESFNSKVRLKFHMQFHECTPMLTDGQYNCTQCGGTFATETQLFDHVHFTHEKTRRWQCPVQDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEELAPTLLLVCRACRRAFRDAQEAQEHAQKSTDCIETIAGELKTEEETAIQLSPTSGIVRQTIQVIECPSPQRLERQVSSPIAAPLLSDLSEEAIQLIRVVEVEKAFRCEYCEDVFYIEDALNNHRAIHKGVKHPFTCHICKVSFATYSRCTTHKTTHGFYKKRPATSGAVVGYGDFPTVKHFLCEWPSVHVHTRLPYFYKQMSKDFKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -