Lhal017616.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000047.1:444453-451208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.82 10.4 0.0 3 23 173 194 171 194 0.96 2 12 4.5e-05 0.0026 18.3 2.4 2 23 217 238 216 238 0.96 3 12 0.0016 0.092 13.4 1.3 1 23 242 264 242 264 0.97 4 12 0.021 1.2 9.9 1.6 1 23 268 291 268 291 0.93 5 12 0.005 0.29 11.8 3.7 1 23 297 320 297 320 0.96 6 12 0.18 11 6.9 1.4 1 11 327 337 327 341 0.90 7 12 0.058 3.4 8.5 1.4 1 23 390 412 390 412 0.92 8 12 0.07 4.1 8.2 1.8 3 23 483 503 481 503 0.97 9 12 0.048 2.8 8.7 0.0 1 23 507 529 507 529 0.96 10 12 0.57 33 5.3 1.1 2 20 534 552 533 556 0.82 11 12 0.0027 0.16 12.7 0.2 1 23 590 613 590 613 0.93 12 12 6.6e-06 0.00039 20.9 0.5 1 23 619 641 619 641 0.97
Sequence Information
- Coding Sequence
- ATGGGCGGCCTTATCGCTAAAAGCGATTTCTTCCAGGCAACCTTTGGATGGAGAGGAGTGATAGTAGTTGGCGTCTGGACGGACGAGCCAATAAAGAAGGAAACTCCCCCCGCGGCGTCGACCTCCCGCGCGGGGGTGAAGCGCGGCCGCCCCCGCAAGGAGCGCCCCCCCGACGTGCCCGACAAGAAGCCTAAGCTCAAACACACCGCCAAGATGCCCAAAGGTGCCAATCGTCCCGAGCTGGCGGTGGACGAGGCATCGAAAAAAGCAATTACAAGCATTAAGCGGAACAGACTTAAAAAGATGAACACTATAACGATATTACAATACTCTAACGTCATCCCGTTTAGATGGCACCGCCAATGCTACCTCTGTTTCTTTTGCAACTCCCAAAAAAACACATTCGATGCTCTAAGAACACACGTCGACATAGAACACAAAACCACCAACATGAAATCTATCGGCGTTCTAATGAGAAAGGACGACAGGATAAAAATTGATGTGGCTAATATAAATTGCAAACTTTGTGACGCCTCTCTCGAAAATTTAGAAGCTCTTATAGATCACCTTAAAACTGTACACGATAAAGTTTTCCACGATGAGTTTGGGTATGGAGTTATGCCGTATAAACATCAGGCGGATACTTGTCAGTGCGCGATTTGTGACGAGACTTTCAAGTATTACATCAAGTTGAATCAGCATATGAACACGCATTACGGACAGCATGTCTGCGAAGTTTGTGGGAAATCGTTTCTCAGCACAAGTCGATTGAAAATCCACACTCTTTCTCATGGATCTGGGTTCCCTTGCAACCGTTGCCCGGAGACTTTCGACTCCTACTCCAAAAGAAAGAACCATTACGCTCAAAAGCATGACATTTCTAAGCTTCACAAGTGTAGCTACTGCCCTGAAACTTTTCCCAACTACGGTCAGCGAACGCTGCATCACCGCTATGCGCACAATATCGACACACCTATCTTTAATTGCCCTGTATGTGGCAAGATTTTCCGTATTTGTAGTGGCAATGAGCCGGTGCCAGTGAAGCTCGAGCTCGGAGACCGAAAGCCTATCCTTTCGGCTTTTAAGCGTAATTGCTTCCAAAAGCGAAACGCTACAACTATCCTCCAAAACTGCACCGCCATCCCGTTCAAATGGCAAAGACAGTTTTACTTTTGCTTCTACTGTAACAGACAGTTCGAACTCTTTGACGATCTCAGAATACACAGCTCTGCGCATAAGAATCCGAACGTAAAATCTGTCGTATCGCTCCTGCGTGGTGATGACAAAGTCAAAATCGACATCGTTTCTCTCACCTGTAAACATTGTAGTTTTGTACCTAAGAACGTAGACGCCCTAGTCGGTCATTTAAGCGCTGCTCATAACATGATCTTCCACAACGTAGGGCACGGCGTCATACCTTACAAGCATTTGATAGATACTTTTGGTTGCGGAACATGCGACGAAAGTTTCGCTTCCTTCGTTAAGTGCAACCaacatatgaacacacatttcggggaatatgtctgtgatatatgcggaaactcatatctcagcgccgaccgtctcagagtacacgcaaagggtcatattagcaccgtcaagtgcggccaatgctcggagacgttTTCTTCTTTCTCTCTAAGAGATACGCACAAATTTAACGTACACGGGAAGTGGAAAACGAAATGTCGGTATTGTGCACAAAAGTTCTCGTGCTATCTCAAAAGAAAAGTGCATCTAAAAACTGTTCACAACATCGGCTCTTTACACCCCTGCCCTGTTTGTGGCAAGGAGTTCTCCATTGCAAGTAGAATGGACACGCATTTGAAAGAGGTTCATTATAAAGAAACAAAGTTCTTCTGTGGCGTGTGCGATAAAGGTTTCTACCAGAATTGGCAGCTGATCAAACATATGGAAAAACACAATGATAAAGAGAGTAGTACCAACACCTAA
- Protein Sequence
- MGGLIAKSDFFQATFGWRGVIVVGVWTDEPIKKETPPAASTSRAGVKRGRPRKERPPDVPDKKPKLKHTAKMPKGANRPELAVDEASKKAITSIKRNRLKKMNTITILQYSNVIPFRWHRQCYLCFFCNSQKNTFDALRTHVDIEHKTTNMKSIGVLMRKDDRIKIDVANINCKLCDASLENLEALIDHLKTVHDKVFHDEFGYGVMPYKHQADTCQCAICDETFKYYIKLNQHMNTHYGQHVCEVCGKSFLSTSRLKIHTLSHGSGFPCNRCPETFDSYSKRKNHYAQKHDISKLHKCSYCPETFPNYGQRTLHHRYAHNIDTPIFNCPVCGKIFRICSGNEPVPVKLELGDRKPILSAFKRNCFQKRNATTILQNCTAIPFKWQRQFYFCFYCNRQFELFDDLRIHSSAHKNPNVKSVVSLLRGDDKVKIDIVSLTCKHCSFVPKNVDALVGHLSAAHNMIFHNVGHGVIPYKHLIDTFGCGTCDESFASFVKCNQHMNTHFGEYVCDICGNSYLSADRLRVHAKGHISTVKCGQCSETFSSFSLRDTHKFNVHGKWKTKCRYCAQKFSCYLKRKVHLKTVHNIGSLHPCPVCGKEFSIASRMDTHLKEVHYKETKFFCGVCDKGFYQNWQLIKHMEKHNDKESSTNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -