Lhal012446.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000030.1:924062-937945[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.3 1.9e+02 2.9 0.9 1 15 235 249 235 253 0.81 2 12 0.022 1.3 9.8 2.4 1 23 266 288 266 288 0.96 3 12 9.1 5.3e+02 1.5 0.8 1 19 292 310 292 316 0.78 4 12 0.00031 0.018 15.6 1.2 1 20 321 340 321 342 0.94 5 12 0.0065 0.38 11.5 1.3 2 21 350 369 350 370 0.92 6 12 0.00024 0.014 16.0 0.9 2 23 386 407 385 407 0.94 7 12 6.7e-05 0.0039 17.7 0.2 1 23 412 434 412 434 0.98 8 12 2.3e-05 0.0014 19.1 5.6 1 21 443 463 443 468 0.94 9 12 0.0018 0.11 13.2 1.9 1 23 476 499 476 499 0.92 10 12 0.015 0.86 10.3 0.2 1 23 505 528 505 528 0.88 11 12 0.0026 0.15 12.7 0.4 3 19 541 557 539 558 0.93 12 12 0.11 6.6 7.6 1.7 1 23 571 594 571 595 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAAATAAATATAAATATTGAAGGGTACAATGTGAACGGAATATGCGTCGGCTGTTTGAACTACAATCGCAAAATGTTTTACGAGAACGAAGTTAAGGAGTGTTTTAAAACTATTGCAAATATTGATGTTCCAGATGGTCTGACCATACAAGTTTGCTGGGAGTGTCTGGCCGCTGTCAAAACGGTGACCAATTTCCAATCCCAAATACTCTCAGCGTATGATGTTCTTATTAAATACTCGAAACAGCACACATTTCTGAACTCACCAAAAGACCTCACTCAGTATGCGTCTACTCGACTCGCCCACTCCACTGTGACGATATTAGATTCCACTACCCCCGACCAAGAACAGGACCAGGAAGTAGAATTGAAAGTAGAGGCTAAACATGAAGATTTTTTATATTTGGATGAAGACAGTACAGTTAAAACGGAAGATGATGATACTCGGTACTCCGCTGACTTCCCTCAGGAACAGTCTTCGGATGAAGACATCCAACTCTCACAAATCAAAGAGAAGAAGGAGAAGAGAGAGAGGAAGAAGAAGAAAAGAGATAAAGATAAGCCAAAAAAAATATCACAAAATCGAAAACTGAAAAACCTACCGGAAGACATAGTTGCATTATACACAATGACCGAGAAGGAGATGTGGGAGGTTCGAGGAAGTGACGTCACAAGCGAGGAGTTCAATAACCTCCGTCACAAATGCGAGCACTGCGTCATTGGATTCAACACTTTGAAGTTGAAGGAGTATCATGACAATGGAAAACATAAACCGAAATCAGGAAAGTCTCACCAATGTGATGTGTGCAAAGCATACTTCCTAACAAAAGACAATCTCACCACTCACCGATCTTTGCACCTCTCCGCCTACAAATGTCTCCTCTGCGGCGTCAAAACCACCCTCAAACGGGTCATAACCAACCACGCGTGCGCCAAAATGCACGCACCTGACCAATTCCCGTGTAACTACTGTGATAAAGTCTTCAATTCTAAACCCAAGTTGAGCTACCACAGAGCGCACTCGTGCCGGCAGGAGAGACCGCAATGCGACTGTTGTGGGAAAGTTTTCGCCAATAAAATGACGCTCAAATACCACCTCAAATTATTACCACAGAAGAAAGAAGAAAAACCTAAAGACAAATTGTACATTCCGTGCAAAGGGTGCAACAAAGTATTCCATTCCAAGAAAAGTTATAGAGCGCATGTCGTAATCCATTCCGGCCTGTCATATCCGTGTCCGATATGCGGTAAACTGTTCCAATGGAAGCGCAACCTCGCGCGGCACACGCGGGTACACCGCGAGAGGGACGCGGGCGCCACGCACCGCTGCCGCGACTGCGACAAGACCTTCAGCAGCCGCGACTGCCTCAACAACCACATGCGGCTCAGCAAGCGGCACGCCAGCGAGGCCACCTATGTACATGAATGTAACTTCTGCGGCAAGAAGTTTCCTACCAAATGGTGCATGGTGGATCATATCGACTGGGACCATCTCAAACGCGTCAAGTACCAGTGCCAAGTGTGTTTCAAGGCGTTTAAGACAGCAAAAATTATGGTGGCACACGTCAATAATATACACGAGGGCAAGAAACGTGAACCAGAGGGCGAGCATTTGTGTGAAATATGTGGCAAGTCATACAAGACGGTGAAGCGTCTGAAGGCGCACGTGTGGGCCATGCACACGACGCGGGCGCGCGCGCGCTCCTACAAGTGCGCGCTGTGCGCCGCCAGCTTCACGTGGCAGACCTCCATCTACAAGCACATGAAGACCATGCACCACGCCAAGCGGGCCAAGCCCGCACGTGCTTTACCCATGGCCAAAAAAGAGGAACCATTCCCGGACATCCAGTATTTCGCGCACCACATCGCATTGCAACCATTGCCGCCACAGAACATCGTCTAA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYENEVKECFKTIANIDVPDGLTIQVCWECLAAVKTVTNFQSQILSAYDVLIKYSKQHTFLNSPKDLTQYASTRLAHSTVTILDSTTPDQEQDQEVELKVEAKHEDFLYLDEDSTVKTEDDDTRYSADFPQEQSSDEDIQLSQIKEKKEKRERKKKKRDKDKPKKISQNRKLKNLPEDIVALYTMTEKEMWEVRGSDVTSEEFNNLRHKCEHCVIGFNTLKLKEYHDNGKHKPKSGKSHQCDVCKAYFLTKDNLTTHRSLHLSAYKCLLCGVKTTLKRVITNHACAKMHAPDQFPCNYCDKVFNSKPKLSYHRAHSCRQERPQCDCCGKVFANKMTLKYHLKLLPQKKEEKPKDKLYIPCKGCNKVFHSKKSYRAHVVIHSGLSYPCPICGKLFQWKRNLARHTRVHRERDAGATHRCRDCDKTFSSRDCLNNHMRLSKRHASEATYVHECNFCGKKFPTKWCMVDHIDWDHLKRVKYQCQVCFKAFKTAKIMVAHVNNIHEGKKREPEGEHLCEICGKSYKTVKRLKAHVWAMHTTRARARSYKCALCAASFTWQTSIYKHMKTMHHAKRAKPARALPMAKKEEPFPDIQYFAHHIALQPLPPQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -