Lhal008624.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lobophora halterata
Gene Symbol
-
Assembly
GCA_932525835.1
Location
CAKOAV010000017.1:10151043-10161840[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.54 32 5.4 1.6 3 23 46 66 45 66 0.98
2 16 0.036 2.1 9.1 0.3 3 23 104 125 102 125 0.89
3 16 2.8e-06 0.00016 22.1 0.6 1 23 127 149 127 149 0.98
4 16 0.0072 0.42 11.3 0.0 1 23 186 208 186 208 0.96
5 16 0.068 4 8.2 4.1 3 23 238 259 237 259 0.96
6 16 0.21 12 6.7 3.3 1 19 266 284 266 288 0.85
7 16 0.016 0.91 10.3 0.2 1 22 294 315 294 317 0.90
8 16 0.0043 0.25 12.0 1.4 1 23 326 349 326 349 0.97
9 16 0.075 4.4 8.1 0.1 2 23 355 378 354 378 0.95
10 16 7.1 4.2e+02 1.9 1.4 3 23 386 406 386 406 0.94
11 16 0.11 6.6 7.6 0.0 1 20 411 430 411 433 0.92
12 16 0.23 13 6.6 0.1 1 20 447 466 447 469 0.91
13 16 0.23 13 6.6 0.1 1 20 483 502 483 505 0.91
14 16 0.014 0.8 10.4 1.5 1 23 511 533 511 533 0.95
15 16 1.7e-06 0.0001 22.7 1.1 1 23 540 562 540 562 0.99
16 16 0.0016 0.094 13.4 0.4 1 23 568 591 568 591 0.97

Sequence Information

Coding Sequence
ATGGCCTCATCCATAGCTTCTATTATAATTCTCAACACGGGCCAGGCGGGAGAAGCTTCGATCGAAATCCCATTCAGGCACAGCAAAAATAATCCACACCAGTACACCTCTGTCGACAAAATTGGCGGCATACTCTGCTGTATTTGTGCTTTGAAGTTTGGGAAGAAGCAAGATTTTGAGCAACACTATGCAACTCACAATGCGGGAGAGGTCGTGTTCACTTGTGTGGCGTGCAACAAGCAGCATTCTAACTACGCCAGCTTCAGAAACCACTGCTACCTCCAGCACATCGTCAGGGACAAGTTTGGGTGCCAATTCTGCAACAAACGTTTTTCAAAACAATCTATTCTCGCTGCCCACGTTACTGCCATACACGAGTTCAAGTGCGGAGACTGCGATGAGATATTTACCACAAAAAAAGATTTGCAGGTGCACAAAATCACTCACAATAAAAAAGGGAAAGACGAACCACCGTACAACTGCAAAAGATGCTCTGAAACAATAATCAGCATTGAAGATTGTGAGAACCACATGGATAACCACTGCGAAATAACCTACCCGTGCCCTGTTTGTGGAAAAATTCTACCGAGTTCACATGAAGCTCAGATGCACTTGGGTGTTCATTTTGAGGAGGAATTCATACCAGACACCGAAGAAACAGCACCATATTGTAAAGAAGATAGCTCCATTGACACTCTAGGTGGCATCCTCTGCTGCCATTGCGACTTATTGTTCAAAAACCGATCGGAACTGGCTTCTCACTTTAATTCAGATCATGAAGAAAAAAATATTGTATACTCCTGCAACATTTGTGATAAACAGTTCATCTCATACACCCTGTTCGGAGATCACTGCTACAGACATATCTCAAAAGGCAGTTTCGAATGTGACCAGTGCGAGAACATATTCCCCCGGCTGTCGCTGCTGGTGAAGCACAACCTCGCGTTCCACTCGGACGGCGCGCCCGACAAGCCGTTCCAATGCGACAAGTGCGAGTTCGCCTTCAAGTCCTACTACCGCCTCGTGGAGCACAAGCGGCTGGTGCACGACGAGGCCTCCATCAAATGCAACCTCAAGGGGTGCTCCGTGGTAGTGAACAGTTCGAAGGAGCTGATAGAGCACCTCCGCGCTCACAAGTCGTGCCTCGACAACTGGTGCCGCTCGTGCGGGCTGCAGTTCGCGACGCGCGCCGCCTGCGCCGCGCACCTGCACGTGCACCGCCGCAAGCGCTACGCCTGCCCCGTGTGCGCGCGCCCTTACGCCGAGCGGTACCTGCTGCTCAAGCACGTGCCCCGCCACTTCGAGACCGTGCTGCACATCTGCAAGGTACGATGGAGGCATGCCTGCCCCGTGTGCGCGCGCCCTTACGCCGAGCGGTACCTGCTGCTCAAGCACGTGCCCCGCCACTTCGAGACCGTGCTACACATCTGCAAAATACGATGGAGGCACGCCTGCCCCGTGTGCGCGCGCCCTTACGCCGAGCGGTACCTGCTGCTCAAGCACGTGCCCCGCCACTTCGAGACCGTGCTGCACATCTGCAAGGTCTGCGGGCGATCGTACGAAAAACGCAACCGGCTAGTCGAGCACTCCAAAATCCACTCCGACATCAAAAATAAATACAAATGCACAAACTGTTCCAAAGCCTTCGTCAAAGCGTACCAATTAGAGCAACACCAACGCATCCACACCGGAGTCAAACCCTACAAATGCGCAGTCTGTCTCCGAACCTTCGCCAGCTATCCCAACTGGACTAAACACCTCACCCGCGTTCATTCCTACACCAAAGACATGATAAAACAAGCCCGAGAGAAAGGCAAACGTACAGAAAAGTCCACACTTCAATCGTCACCAGCTAAAACTGAATCTGGTATCGAATCCGCCGGCTCTGAACTCTCAGATCTCTACGGCTTCGTTGAGTCTGATGACAGCGAATCAGACGACCCCATTAAAAAGATCAAACAAGAAATCGGTCGGAATACATACGCAAATTACGCCAATATTAACATAAAGGATGCTCCTTCCGTGGAATCCATTACCGATACGGTAAACGCTGTGATCGAACGCATTGACTCTATGGATGATTTGGATATGATAGCCAAGGAATTGGACAATTTTACAGAATACAAAAATATCCAAGCGGTGGAGTTCGAATCAGATTTTGCTACAGATTACAATAGTGGTGTAAAGATCACTGATTTCAGTGATTTTAATGATTCGAGCGATATCAAAGCGATTGTGGAACACATAGACGCGCTGAGCGGGGGATTGGAGATGGAGGCCACTAGTCAGGCTCCCGCGGCCTCCGAGATGCTGCAGTTCACGGAAATGCCGTGCGTGGAGAACATCGCCTTTGATTCTGCGTATTCAACTCCGCTGCTCGAGCCAAGCATTGGATACCAAAGCAACAGCGTGCCGCTCGAATACGGACCGGATTTCACCACCCTTGGCTCGGAATCCTTCCCCATAGTCATGGATTTAAACGACCACGTCCTACCACATATCGATCCCCTACTCACAATCAAGGCAGAGGAAAATTCCAAAGTGTTTGTCCAAAATCCAATCGAGAATACTTTCGGGCAGGATTGGGAGCAACCGATTATAACTAAGCTGTTATCATACGATGATACGAACGACGTTAACCGAATGTTTGTACTGAATGTTAGGCGGTCCGGTCGCGGGCCGGACGCGGGCCGACGCGGGCCAGACGCGGCGAGAACGTGGTACAAAACGAGACCGATCCGACGACGGATCGGCAACAAACACGGGCGCTCGAGCACCCGCTTGCAAAAACAAAGGTTTACTTAA
Protein Sequence
MASSIASIIILNTGQAGEASIEIPFRHSKNNPHQYTSVDKIGGILCCICALKFGKKQDFEQHYATHNAGEVVFTCVACNKQHSNYASFRNHCYLQHIVRDKFGCQFCNKRFSKQSILAAHVTAIHEFKCGDCDEIFTTKKDLQVHKITHNKKGKDEPPYNCKRCSETIISIEDCENHMDNHCEITYPCPVCGKILPSSHEAQMHLGVHFEEEFIPDTEETAPYCKEDSSIDTLGGILCCHCDLLFKNRSELASHFNSDHEEKNIVYSCNICDKQFISYTLFGDHCYRHISKGSFECDQCENIFPRLSLLVKHNLAFHSDGAPDKPFQCDKCEFAFKSYYRLVEHKRLVHDEASIKCNLKGCSVVVNSSKELIEHLRAHKSCLDNWCRSCGLQFATRAACAAHLHVHRRKRYACPVCARPYAERYLLLKHVPRHFETVLHICKVRWRHACPVCARPYAERYLLLKHVPRHFETVLHICKIRWRHACPVCARPYAERYLLLKHVPRHFETVLHICKVCGRSYEKRNRLVEHSKIHSDIKNKYKCTNCSKAFVKAYQLEQHQRIHTGVKPYKCAVCLRTFASYPNWTKHLTRVHSYTKDMIKQAREKGKRTEKSTLQSSPAKTESGIESAGSELSDLYGFVESDDSESDDPIKKIKQEIGRNTYANYANINIKDAPSVESITDTVNAVIERIDSMDDLDMIAKELDNFTEYKNIQAVEFESDFATDYNSGVKITDFSDFNDSSDIKAIVEHIDALSGGLEMEATSQAPAASEMLQFTEMPCVENIAFDSAYSTPLLEPSIGYQSNSVPLEYGPDFTTLGSESFPIVMDLNDHVLPHIDPLLTIKAEENSKVFVQNPIENTFGQDWEQPIITKLLSYDDTNDVNRMFVLNVRRSGRGPDAGRRGPDAARTWYKTRPIRRRIGNKHGRSSTRLQKQRFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-