Lhal007873.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000016.1:6882860-6891006[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1 59 4.6 0.1 3 23 110 130 108 130 0.95 2 19 0.15 8.6 7.2 0.6 2 22 134 154 133 156 0.88 3 19 0.046 2.7 8.8 0.1 2 23 395 417 394 417 0.95 4 19 0.026 1.5 9.6 0.3 1 21 425 445 425 446 0.94 5 19 0.13 7.8 7.3 0.3 2 23 456 477 455 477 0.93 6 19 1.2 68 4.4 0.7 1 23 493 516 493 516 0.84 7 19 0.0027 0.16 12.6 1.9 1 23 525 548 525 548 0.94 8 19 5.7 3.4e+02 2.2 4.4 7 23 599 617 592 617 0.83 9 19 0.0032 0.19 12.4 1.5 2 23 628 650 627 650 0.90 10 19 0.29 17 6.3 0.4 1 23 655 678 655 678 0.93 11 19 0.00068 0.04 14.5 4.7 1 23 684 706 684 706 0.96 12 19 5.1e-05 0.003 18.1 2.2 1 23 713 735 713 735 0.98 13 19 3.6e-05 0.0021 18.5 1.4 1 23 740 762 740 762 0.96 14 19 0.0079 0.46 11.2 2.6 1 23 768 790 768 790 0.97 15 19 1.7e-06 9.7e-05 22.8 1.6 1 23 796 818 796 818 0.98 16 19 7.6e-05 0.0044 17.5 2.0 2 23 825 846 825 846 0.98 17 19 0.0004 0.023 15.3 0.7 2 23 856 878 855 878 0.96 18 19 0.047 2.7 8.8 2.1 1 23 883 905 883 905 0.97 19 19 0.00032 0.018 15.6 3.5 1 23 911 934 911 934 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCAGATGACTCCGACGACGAACCTCTAGCTTTGTTGGCCTCAAAGAAGAACACATTAGATTATGAAGTGGAAATTTTGCCCGTGAGCGAAAGTAGAGCCCGTAAAAAGAAGTCTTATATATCCAACAAGGAGTGTGATGTTACAATAGAGCTTCAGAAGGAAGATCTGTCGCCATTGGTTGTTGAGAGGCCTACTGATGTTTGGTTGTATTTGAAAGACCTGAACCCTTATGGACCTTACAGCTGCTTGCTCTGCTCTGAATGGTTTATTAACAAGACAAAAATAGTCATCCATTATGTAATAAACCATAAAAAGGATTTTTGTGGCATATGCAGATATTTTGTGCCTGACCGAGAAGCATGGCAAAGTCACTTGAACTTCCACACTCCGTGGCATTGCTCACAGTGCCCCGACACATTTGCCACTGAATCCTTACTCCGGGAGCACTTTAGTGACGAACACAATTTGGTGCACTGCCGATTCTGTTACACTCGTCTCATTGATGGTGATGAGTACCACACCCATCTATTTCAAAAGCACAGTGTCACTAATGTATCTTGCAAGAACGAGGACACATTCTGGCAGTTTGAATTGGAAGAGTTCAAATTCTCATGCATTCTGTGCTCAAAATCCCACAACTCGATACAAACATTCTCAAACCACTACATGGCATACCACCATCTGACTTTGAAATGTCTAGCACCTCTCATATCTGGAAAAAACTGGAATTTTCCAGTCCAAGGTGCCGAACTAACCACAGAATTCCTAGAAGGTGAACTTAAGAGCTACGATAAGTATGGTTACGTAGATTTGGGGAAGAAACCGGACCGATTAATTGATCTTGTAGAAGAGGCTGCTAATAGTATGGCAATTACGCATGAGTTTGTAACAGAAATGATAAAAGAAGAAGTTGATGAATCGGACATTATTGAAGAACCGGATAAAAAACTACAACGACCAGATATTGTAACAATAGATGGAAAGAAAATGAACCGTGATCAACTCACTCGGACATATAAAGGGGCTGATGACTTCGATATAACACAAGTCGAAATGGTCATGTTGCAGAAGTATTGTTTCGATTACATCGATGACACATTGACTAAAATCAACTCTAATACAATGCCATTGGTAACAATTAACTACGGTAGCGATTCTGACGTTCTAATAGATATGTCATGTGGGCTCTGTGATGCTAAATACCCCACTCTGAACGCATTCATTCAACACATGATAAAAATGCACAATGTAAAAATATCATCTACATATTGCTGCCGGATCTGCGCAACAAGTTTTGAAAGTCAAAACGAATTGGATGCACACATACTCCAAGAAATGGGTGATTTCGAAGATCTTTGGATCTGTCAGTTTTGTGAGAAGGAATTCGACAATCGAGTGGAGACAAGAGAGCATTTGACAGAGCATTGGGATTTGATAGAGTATGACAATTGCTTTAGCCCTCACCTGGGGTTCAAGTGTAAATACTGTCCGACGTTATTCTGGAACGAGACGGATAGGGAGACACACCAGGTTCGAGTGCATTTCCTGCAATACACAGAAGAATATTACAAATGTGAAAGCTGTGATAAACTCTTCAGTGATAAGGTTTGGTTCATCCACCATTACTTGGGCAAACACGCGAAAATCCAAGACAAGTCCTCTATAGGTTGCTACCTCCTCAAATGCTGCCTCTGCTGTGTGGTGTTCCAAAATGTGAGCGATGTGAGGGCGCACTTCAATTTGAAACACCCTGAAGCTAGACGAGTGTTCTGTTCATTGGATACTTGCAAACACAAGCCGTTCAGCCATAAGAAGTCGTTCCAGTTGCATTTGAAGGGTTTTCACGGAAGCCTCAAGAAGCGTTTAGACATAATCAGCTGTCCCATATGCGGCAAGGCGTTCAACCATCAACGCTCGTGCAGCGCGCATATAACGCAAGCACACGGCCCCGGCCGATTCGCGTGTACGCTTTGCAAGGAGATGCTACGTACTGCCGATGAAAGAAAAATCCACTATCTTCTCCGTCACCCGGGGAGGCATCCATTCCAATGCCGCGACTGCGACAAATCCTTCCAGTACAAGTCTTCGCTGTACCTCCATCGGCATGAACACGCGCCCAACAAACAGGAGTTCAAATGCACATACTGCGAGAAAGTTTTCCAGAAACGCGATTCATTCCGCGAGCACTTAATGATTCACGAAGGTCCTCGCCACGCTTGCTCCTACTGTCCTATGGTCTTCGTCCAGCGATCTAACATGCTACGTCACGAACGGAGACATACCGGCGAACGGCCCTACGCCTGCCAATTCTGTCCTAAAACCTTCTCTGATAAAGGCGCCTGTTCCTCACACTCAAGGACCCATCAGCAAATGCCGGCGTTTCCGTGTATGTACTGTGGGCAGACCTTCGTGCAGAAGTCGAAACTGACATATCATATCAGAAAACATACCGGGGAGAATTTGGAGACGTGTCCGCAATGCGGTAAGATCTTCACGAGCGGGTGTTCGTTGCGGGAGCATTTGAAAACACACGAGAAGAAACATGTTATGAACCCAGTGAAATGTCCGCTTTGTTCGAAATCCTTCCAAGACGAGAAGTACATGATGCGTCACCTTCGCGGCACGCACACCAACACCTCCCACCCGTGCCCGTTGTGTCGCAAAAAGCTGCACAGTACCGCCTCGCTGCGGGACCACGTGCTCACCCACAGCAAGTGCAAGGTGTTCCGGTGTAACCTCTGCTCCAAGTCTTACAACGTGAGACGCACAATGATGAGACACATGCGCAGGCGTCACGGCCTCAAAAGCAAGGAGGCTAATATAGCAGAGTTCTTCAAACGAGTCGACCCCAGAGAATGCAACCTTAACTTAGACGACGAAACTATGAACAGCATTTTCGGACCGCCAAAACGAAAAATCACTAATGTCATCGACTTCGTCACGAAGAGATTCAAACCGAATACGGAGAATTCAGAAAACTCGCAAAGTGATAAAAGCGACGTGGAATCGAGTGAGAAGGAGACGCAGATAGACCATGTCCAAGTGAAGCTAGAATGTGGAGATAATGAAGAACCAAGTGAAAATCTACAGCCAACTGATTTTGTGAGCGTAAAGATTGAATGTACGGACGGTATAGATGTAGAGAGGTGTGAAGAAGAACAGTGA
- Protein Sequence
- MSSDDSDDEPLALLASKKNTLDYEVEILPVSESRARKKKSYISNKECDVTIELQKEDLSPLVVERPTDVWLYLKDLNPYGPYSCLLCSEWFINKTKIVIHYVINHKKDFCGICRYFVPDREAWQSHLNFHTPWHCSQCPDTFATESLLREHFSDEHNLVHCRFCYTRLIDGDEYHTHLFQKHSVTNVSCKNEDTFWQFELEEFKFSCILCSKSHNSIQTFSNHYMAYHHLTLKCLAPLISGKNWNFPVQGAELTTEFLEGELKSYDKYGYVDLGKKPDRLIDLVEEAANSMAITHEFVTEMIKEEVDESDIIEEPDKKLQRPDIVTIDGKKMNRDQLTRTYKGADDFDITQVEMVMLQKYCFDYIDDTLTKINSNTMPLVTINYGSDSDVLIDMSCGLCDAKYPTLNAFIQHMIKMHNVKISSTYCCRICATSFESQNELDAHILQEMGDFEDLWICQFCEKEFDNRVETREHLTEHWDLIEYDNCFSPHLGFKCKYCPTLFWNETDRETHQVRVHFLQYTEEYYKCESCDKLFSDKVWFIHHYLGKHAKIQDKSSIGCYLLKCCLCCVVFQNVSDVRAHFNLKHPEARRVFCSLDTCKHKPFSHKKSFQLHLKGFHGSLKKRLDIISCPICGKAFNHQRSCSAHITQAHGPGRFACTLCKEMLRTADERKIHYLLRHPGRHPFQCRDCDKSFQYKSSLYLHRHEHAPNKQEFKCTYCEKVFQKRDSFREHLMIHEGPRHACSYCPMVFVQRSNMLRHERRHTGERPYACQFCPKTFSDKGACSSHSRTHQQMPAFPCMYCGQTFVQKSKLTYHIRKHTGENLETCPQCGKIFTSGCSLREHLKTHEKKHVMNPVKCPLCSKSFQDEKYMMRHLRGTHTNTSHPCPLCRKKLHSTASLRDHVLTHSKCKVFRCNLCSKSYNVRRTMMRHMRRRHGLKSKEANIAEFFKRVDPRECNLNLDDETMNSIFGPPKRKITNVIDFVTKRFKPNTENSENSQSDKSDVESSEKETQIDHVQVKLECGDNEEPSENLQPTDFVSVKIECTDGIDVERCEEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -