Basic Information

Insect: Lobophora halterata
Gene Symbol: -
Assembly: GCA_932525835.1
Location: CAKOAV010000047.1:1045894-1059361[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0029 0.17 12.5 0.6 1 23 249 271 249 271 0.94

2 10 2.1 1.2e+02 3.6 0.4 3 23 295 316 294 316 0.94

3 10 2.1e-05 0.0013 19.3 2.0 2 23 338 359 337 359 0.96

4 10 2.4 1.4e+02 3.4 1.4 2 23 364 385 363 385 0.93

5 10 0.00065 0.038 14.6 2.5 1 23 393 416 393 416 0.92

6 10 0.023 1.4 9.7 0.6 1 23 422 445 422 445 0.91

7 10 0.00011 0.0067 17.0 0.5 1 23 451 474 451 474 0.98

8 10 0.00031 0.018 15.6 1.5 1 23 480 502 480 502 0.98

9 10 4.8e-07 2.8e-05 24.4 0.6 1 23 508 530 508 530 0.99

10 10 4.3e-06 0.00025 21.4 1.7 1 23 536 559 536 559 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0029	0.17	12.5	0.6	1	23	249	271	249	271	0.94
2	10	2.1	1.2e+02	3.6	0.4	3	23	295	316	294	316	0.94
3	10	2.1e-05	0.0013	19.3	2.0	2	23	338	359	337	359	0.96
4	10	2.4	1.4e+02	3.4	1.4	2	23	364	385	363	385	0.93
5	10	0.00065	0.038	14.6	2.5	1	23	393	416	393	416	0.92
6	10	0.023	1.4	9.7	0.6	1	23	422	445	422	445	0.91
7	10	0.00011	0.0067	17.0	0.5	1	23	451	474	451	474	0.98
8	10	0.00031	0.018	15.6	1.5	1	23	480	502	480	502	0.98
9	10	4.8e-07	2.8e-05	24.4	0.6	1	23	508	530	508	530	0.99
10	10	4.3e-06	0.00025	21.4	1.7	1	23	536	559	536	559	0.98

Sequence Information

Coding Sequence: ATGTGTGCGGCTAAAAGCAAAGGCCCACTGCTCGAACAAGGCCTGTGCCGTTGCTGTGGGACCATAAAACGATGCCGGATCCTCAATGTGGAGTACGAATGGCAGGGGCAAAAAGAAGTTTACTCAGATATGTTTATGGACTGCTTTGGGTTGCTCCTATCTCACTTGGAAGGTGAGGATAGGGAGCGAGTGATATGCGCCACCTGTGTCACGCGTCTCCGGGACGCCACCGCCTTCAAGCATCAGGTGCTGCGCTGTGAGACCAACCTTTTGAAGACTAGCATCAAGGTCTACAGTGAAGATGGAGCCGGTATCGATGTGAAGACAGAAGTAGAGCTCAAAGTGGAAGTGGTGGACAATCCGGGATTGTTAGACCTTCCGCCTGGTGATGGAGAGGATCCAGACTTGGACGACTATGTGAATGATGCGGTTGATGATGATACGGCAAGTGTGATGAGTGATACGAAAATAAAGACAAGACTTCGCCCTTTGAAGAAAAAACTGATCAAAACCAAATTAGGATCAAAACTGAAAACCAAGTCCCTAGTGAAGAAGGCGTATTTGAAGAACAAGAAAGCCCTTCAGAACAAGTTGAGGGAAAGAGGAGAGGAGATAATGAATTCCCAACTCATCGCACCACAACCGCGGCCAAAAATTATAGAAAATgagcagaaatccttccacaacaccctcacaattgtagaaaactcctacgtttgtccattctacacatccttcagcgattactactgcatctactgtcgtgaaaccttcacagacccggacaagctacgagaccacacattagaacatgatcctaccagttttaaagaaatctatgacaataaaaaacttgcccagattgatacaattagggtagactgccgactttgcccccaacacataaacaacatcgaattattaaaggaacatcttcaaaatgtacacggaaaatccctatatccaatcgcaaatgaatttcttaagtttcgtttaacgattaatcatattacttgcacggaatgtggtagatcttttaaattcttccacgcattaaaaaaacatatggctgagcatttcggtacttgcatctgtgatatatgcggcgctcattactttgaagaaagaatactcttgattcatcaaaaaacacacctaaaaattcccgagaaattatacccttgcaaagagtgtgataaaactttcaaatcgaggcataatcggtatttacacgaggctagagtacataagaaagaagcggcgtatccgtgcagtaaatgcgatgaggttttcttcacatatacactacggtatagacacttaatagatgtgcacggagaagagaggatgtatccttgtgataactgtgagagggtgtacgactcgaggaagtctttgagagaacatgtgagacggtcacacttaaaaataatgaagcatgaatgtgaggtgtgtgagaggcgtttttacctgccgtccaggcttaaagaacacatgtctacacacaccggtgagagaaattaccgttgtgaatattgtggtaaaagttacccgaggttgagagggttaaaagtacacatgcagtcgcatggtacagagaagaagtacagatgtatgctgtgtaatgcgtctttcacgcaaaatgtgaatttgaagaatcatatgaaaaAACAACATAATAGCTTAGAGTTGGATGAAAATTATCAAAGTGATATAATGTTGCCTCGCCAGCTTCGCATCAGCAAGCATCATCATCCTTCCCTGCAGGGCGACAAAATGTCTGCCTTAGTTTGTAGAGTGTGTTTGTGCAGCAATGTGATGATGCACAGCATTGAGGGCAACAAACTCGTTGAAATATACGAGACAATGTCGGGGAGCACGCTGTACACAGACGATGGGCGACCCACAATGGTGTGCTACATATGTGTCTCGCAGCTGCAGAGATGCCGCAAATTCTACAACAGGGCTCGCGAGACTGAAAAAACCCTGTCACAGCGGTACCACAATGGCGTTGAGGTGCCGTGCAATGACATCAATGTGCTGGACCTGGCTGCCACTCATAACCTGACTGTGACAGCTCTACCACACTTGGACATAATAGATTACTCAAGGAAATTGCGTTTTCCAGGAAAAGTTAAGGAAGAACCAGTAGTTGTGAAGGAAGAACTGGTTAAAGAAGAAGGTCTGATTGACATTGAAGAGAGTAGACTTGAAGATATTAGGGAGAGTTCACTTGATGTTGATAACGTGGATAGCTGTCACGATACAGAACAGCATGTGTCGGAAAGTCTGTATTTATATTGTGATATGAAGTCCTACAGGAGGGATGATCGAGGTGAGCGCAGTCTGCAGGACGTCATCACCGTCCTCAAGGTCCGGGGTCAGTACCCCGATGACGTGCCTGCCTTCGTCGCCCGTAACCTGCATCGTGTGCCACCGCTGGATTTCGACCACATCGACTGTACAAAAATGATTTGTGACAGCCCCGTTCCTGAGATATCAGCGAAAATACCTGGCCCACGGTTCTGGATCCAGAACCCTGTGGCCAAGTACTTTTGA
Protein Sequence: MCAAKSKGPLLEQGLCRCCGTIKRCRILNVEYEWQGQKEVYSDMFMDCFGLLLSHLEGEDRERVICATCVTRLRDATAFKHQVLRCETNLLKTSIKVYSEDGAGIDVKTEVELKVEVVDNPGLLDLPPGDGEDPDLDDYVNDAVDDDTASVMSDTKIKTRLRPLKKKLIKTKLGSKLKTKSLVKKAYLKNKKALQNKLRERGEEIMNSQLIAPQPRPKIIENEQKSFHNTLTIVENSYVCPFYTSFSDYYCIYCRETFTDPDKLRDHTLEHDPTSFKEIYDNKKLAQIDTIRVDCRLCPQHINNIELLKEHLQNVHGKSLYPIANEFLKFRLTINHITCTECGRSFKFFHALKKHMAEHFGTCICDICGAHYFEERILLIHQKTHLKIPEKLYPCKECDKTFKSRHNRYLHEARVHKKEAAYPCSKCDEVFFTYTLRYRHLIDVHGEERMYPCDNCERVYDSRKSLREHVRRSHLKIMKHECEVCERRFYLPSRLKEHMSTHTGERNYRCEYCGKSYPRLRGLKVHMQSHGTEKKYRCMLCNASFTQNVNLKNHMKKQHNSLELDENYQSDIMLPRQLRISKHHHPSLQGDKMSALVCRVCLCSNVMMHSIEGNKLVEIYETMSGSTLYTDDGRPTMVCYICVSQLQRCRKFYNRARETEKTLSQRYHNGVEVPCNDINVLDLAATHNLTVTALPHLDIIDYSRKLRFPGKVKEEPVVVKEELVKEEGLIDIEESRLEDIRESSLDVDNVDSCHDTEQHVSESLYLYCDMKSYRRDDRGERSLQDVITVLKVRGQYPDDVPAFVARNLHRVPPLDFDHIDCTKMICDSPVPEISAKIPGPRFWIQNPVAKYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -