Lhal015174.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000037.1:1607381-1622661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 0.66 10.7 0.1 1 23 187 210 187 210 0.96 2 11 0.0032 0.19 12.4 4.0 1 23 217 239 217 239 0.98 3 11 0.023 1.4 9.7 2.5 1 23 243 266 243 266 0.97 4 11 0.00085 0.049 14.2 0.5 1 23 300 322 300 322 0.96 5 11 5.3e-05 0.0031 18.0 0.9 3 22 334 353 333 357 0.92 6 11 7.5e-05 0.0044 17.6 0.6 1 23 391 413 391 413 0.98 7 11 0.011 0.62 10.8 0.1 3 22 423 442 421 446 0.88 8 11 4.4e-06 0.00026 21.4 1.4 1 23 454 477 454 477 0.94 9 11 0.00011 0.0063 17.1 1.3 2 23 484 506 484 506 0.96 10 11 0.0002 0.012 16.2 1.0 3 23 515 536 513 536 0.91 11 11 0.012 0.73 10.6 2.6 1 23 542 565 542 565 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCAGAAATAAGTCACCAATGTTGCGGTTGCCTCGCCCGCGACCGGAAAACACATCTCATTCAGAACATTTGGAAAGAACAGTGTTTTTTACAAATGATTACAGAATTGGAGATATCCACAACAAATATGTGTAAATTATGGCTGTGTTATGAATGCGAAGCACACATCACAAGATTCGCCAGGTTCCGGCTTCAAGTCAAACAGTCGTACCAAATCCTGCACGGGATTGCTGTTGAAAATCCAATCTTAACGAAGCAAAAACTGAGCATATACAATGTAGTAGACATCTTACTTACTCCATCTCTCGATCAAGAAATTAATATAAAATGTGAAGAAGATCTATCTACAGACATAGAATTAGATAACACAGATGACACATACAAAGTAAATGAAAAAAAAGTCACAAAAAAGCGTAAAAAGATAGATAAAAAGAGTAAAGTAAAAAAAAATAAAGTTCAAAAGGTGTGTTACCGAGAAATTGAGCAAACCACCGAAGAAATGATTGAAGAACGAAATGAGATGGCATTGGAAGATGAATATGTTAATGCCATGTTTCGGTGTGGGGACTGCATTGTGGCATTTCCAAATGAAGACGATTTGAAAGACCATATTTATATGAAGCATGAGTTGAACGAGACCAAACACAAATGTAGTATATGCTTGTGCGCATTCAGCTCAGAAGTGGCGTATACCTACCACATGCGCAGGCACAGGAGGCGATATGAGTGCGCCATCTGCCGACTGAGGTGTACTAGCAAGCATAATGCGGTCAAACATTATGCTACTGCACACACAAAAAGTGAAGATGTTGCGGTAAACATTTATGATAAATACCAGGAAAGTGAGAATCAATTGAAAGATACAGGTCACAATAAGAAGTCAACAGAGCAGTTTCCATGTGAGTTCTGCTCCAAAGTGTTTAGCTGGAAGACATCGCTGCGCAAACATGCCGAGGTGCACAAGATCGACGCGGGGCAGATACGCAAGCCCTACTGCGCCATATGCAAATTATCATTTACAAATTCAGCTAACCTTCAGAAGCACGTCAAAACCAGTTCTAAGCACCAAATTCAACTTAAACTAAGAAAACTAAAAGAACTTAATCCAGATGAAACCACGACAGCCACAGACATCGCTGATGTGGTGAACAAACAACGAGAATTGTTCCCGTGTCCGCAGTGCGATAAGAAGTTCCAGTGGAGGGGCAATCTATTGCGGCATCTAAAGAGCCACACGGCGAGAGCGAGCGGCTCGCTGGTGTGCGCGCCGTGCGACCGCGTGTTCGCTTCGCTCGCTACGTACCAGCAACACATGAGGGTCAGCAGAAAACACGTCTCCGAGACTGATTTCAAACACATGTGCAGTGAGTGCGGCAAGAAATTTCCTAACAAAAGTAAACTTAAGGACCACGTTAATTGGGAACATCTCAAGATCTTTGTCAACACTTGTACTGACTGTCAGAAGATATTCAAAACGCGCACGTCTTTATACCTACATCGGCAGGTGGTACATAAGAAGGCAGACGGCGGCCATCTTTGTGAGAACTGCGGGAAATCATTTGCGCTCCGAACGAAGCTGCGTTCCCACATGGCCGCCATGCACTCGCGCGCCGCGCCGTACGCGTGCGGCACGTGCGGCGCGCGCTTCTCATGGCACAGCTGCCTCTCGCGCCACGTGCGGCGGCTGCACCCCAACGTTACCAACACCGACAAACATAAATAG
- Protein Sequence
- MEAEISHQCCGCLARDRKTHLIQNIWKEQCFLQMITELEISTTNMCKLWLCYECEAHITRFARFRLQVKQSYQILHGIAVENPILTKQKLSIYNVVDILLTPSLDQEINIKCEEDLSTDIELDNTDDTYKVNEKKVTKKRKKIDKKSKVKKNKVQKVCYREIEQTTEEMIEERNEMALEDEYVNAMFRCGDCIVAFPNEDDLKDHIYMKHELNETKHKCSICLCAFSSEVAYTYHMRRHRRRYECAICRLRCTSKHNAVKHYATAHTKSEDVAVNIYDKYQESENQLKDTGHNKKSTEQFPCEFCSKVFSWKTSLRKHAEVHKIDAGQIRKPYCAICKLSFTNSANLQKHVKTSSKHQIQLKLRKLKELNPDETTTATDIADVVNKQRELFPCPQCDKKFQWRGNLLRHLKSHTARASGSLVCAPCDRVFASLATYQQHMRVSRKHVSETDFKHMCSECGKKFPNKSKLKDHVNWEHLKIFVNTCTDCQKIFKTRTSLYLHRQVVHKKADGGHLCENCGKSFALRTKLRSHMAAMHSRAAPYACGTCGARFSWHSCLSRHVRRLHPNVTNTDKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -