Basic Information

Insect: Lobophora halterata
Gene Symbol: rst2
Assembly: GCA_932525835.1
Location: CAKOAV010000020.1:1964803-1980887[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.15 8.8 7.2 0.0 3 23 158 178 156 178 0.96

2 11 0.00048 0.028 15.0 1.6 1 23 265 287 265 287 0.99

3 11 9.2e-05 0.0054 17.3 0.4 1 23 293 316 293 316 0.97

4 11 0.11 6.2 7.6 2.9 2 23 322 344 321 344 0.93

5 11 5.1e-07 3e-05 24.4 1.3 2 23 586 607 586 607 0.97

6 11 0.00018 0.01 16.4 1.3 1 23 613 635 613 635 0.98

7 11 0.0061 0.36 11.5 3.6 1 23 702 724 702 724 0.97

8 11 0.011 0.62 10.8 1.0 1 23 759 781 759 781 0.96

9 11 1.2e-05 0.00068 20.1 1.0 1 23 790 812 790 812 0.98

10 11 0.018 1.1 10.0 2.6 1 23 821 843 821 843 0.98

11 11 0.00011 0.0067 17.0 0.9 3 23 899 919 898 919 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.15	8.8	7.2	0.0	3	23	158	178	156	178	0.96
2	11	0.00048	0.028	15.0	1.6	1	23	265	287	265	287	0.99
3	11	9.2e-05	0.0054	17.3	0.4	1	23	293	316	293	316	0.97
4	11	0.11	6.2	7.6	2.9	2	23	322	344	321	344	0.93
5	11	5.1e-07	3e-05	24.4	1.3	2	23	586	607	586	607	0.97
6	11	0.00018	0.01	16.4	1.3	1	23	613	635	613	635	0.98
7	11	0.0061	0.36	11.5	3.6	1	23	702	724	702	724	0.97
8	11	0.011	0.62	10.8	1.0	1	23	759	781	759	781	0.96
9	11	1.2e-05	0.00068	20.1	1.0	1	23	790	812	790	812	0.98
10	11	0.018	1.1	10.0	2.6	1	23	821	843	821	843	0.98
11	11	0.00011	0.0067	17.0	0.9	3	23	899	919	898	919	0.98

Sequence Information

Coding Sequence: ATGAGCACCAACGCAACAGATAACGATCCACTCAGTCAATATGGACTTGCTTCATACAACTCGTACCAACCACCGTTTGTTCAAACGACGCAACTACCTTACGCATTTTCAAATAAGGAATACAACCCACAGGCTTACACTGACACACAGAGTGTACCAATAAATTACGTACAAAATGTCATAGAAAATGTACAAAATGTACCAAATATTATCATACAAAATGTACCGAATAATGTCATAGAAAATGTACCGAATTCACAAAATGTACCATCAAATGACAATGTACAAAATAATGAACATTTGGCTCAAGATGAAGACGGTGACCAAATGGTTACCATCCCAGATGAAGAAGAAGATATAAAACCTGATATAACACTATTAGAAAAACCGAAACGAGGTAAAAAACCCAAAGGAAAGACAAGTAGTTATTGGAACAAAAAAATTACCGACAAAGATTTCAAATTCTACGGTTGTTCTGTCTGCAATATCGCTTTTCAAGACCTAACGGAGCTAGATTCACACGTAACCATCCACAGTAATCGTATAACAAGCTATGATATACGTCTACAGAATTTGAAAAAGCGAAAACGTTTGAAAAAGGAAAAGAAAAGGAAAAAAAAGGATGCAAAAGTCAAAAACGAATTTGAATCGCAAATTGAAATTAAACCGGAAGACGGTTACATCGGCACAGAAACCGCTGATAACTTCAACAAATGTACGAAAATTAAAGAAAATGTCGTTAAACTTAATGAGAAAAATGGGAGTTTGTTGAAAAATGGCAAAGACCAAGTGTACCAATGTTTTGCTTGTAACAAAAAGTTTGCTTTGAGTTATTATCTTAAAATACACGTCAGATCTCATACTGATGAGAAGCCCTACACGTGTAGCTACTGCGGTGAAAACTTTATAACTGCCAGTAAAATGGGCCGCCACGTCAAGCGGATACACCTAGCCATCCGAAACCAATGTAGAATATGCTTTAGATATTTTAACAGATTTGAACTACTCACAAAACATTTTGATAAGAAACATGCTGACCAAAAGTTGGAGGGGGAACCTTACGATTACAACGCCATCTTACCATATCTAACCGACTTAGAATTGGATGACCAGCTAAAACCAGAAAATGATACTAAACCGAAATGTGAAGACCCCTGGGACGGAGCGTGTCCTCAGGACTCCGCAGACCAAGATATAAAGGTCGATCCCGACTGTACTGCTAAATTAGAAGATGCCAAAATCGATGAAAAACCAGCTAATTTTGAGTTTGCTGCGAATAAACCTCATATAATAGAGGAATTCAATTTGGATGCTGTGAAAGAAGAACCAGAGGTACTACTCGGGCGAATAAACATGACACCTGGCTCGAATGACGTTTGTGCAAAGTACAGCGTGGAATTGGATAATCTTGATAGAGAAGAGGTCCTGCAATACTTGGTAATGATAAATAATGATAAGGCTTCGCAATTAGAGGAAGAAGAAACACGGAGGGCGCCGCGCGGGGGGCGGGGGACGCAGCAAGTGCCGAGCGAGAGTGGCAGCCAGATGTATGAAGAACTACAGGTGCTGACCAACCCTGACTTAAATGATGACGTGTATGAACAGGGATCGACCGATGACGATTATGAGCCCCTCGTGGATGAACGGGCTCCATCCGACGATGAAGAGTACTTCCCCCCCGATACGTGGGCGCGTTCGCCCCCCCACGAGCCGCCCCCTCCGGCCCACTCGCCCACTAGAAACAAGGGGCCGGGGGTGTGTCAGCTGTGCGATAGATCGTTCAGTAGCAAGTCTTACTTGAAGGTGCATCTGAGGACGCATACGGGTGAGAGGCCGTTTTCTTGCTACGTTTGTGGCCGCGGCTTTATAACGGCCAGCAAGATGCACCGACACGTGCTTACGCATGACGAGTCGTGGATCGGTGAGGGTAGAATAAAGCCAGAAGGGGTTGTCAAATCTGAAGAGGAAGCCGATGAAGATGTAGTTAAAAAGGAGAAAAAAAGTAAAAAAGTAAAAAGTCAAATAGACAAAGCGAAGGCGAAATTGTTGAAGAAACCAAAGAGAAAAATGGACCCCAAAGTGAAGCTGGGCCGCGGCCGACCGCACAACTGCGAATACTGCGGCAAGAAATTTTTGCACATAGAGACATTACAAGTTCACTTAAAAAGCCACGAAGGGGAGGAGTTGATCTTCAAATGCGTTTACTGCTTAGAACCACAACTGGATCAGGAGTCGCGGCTGGAGCACGAGAGCACCCACACGGGACCGAAGCCCTATCTGTGCACGCTGTGCGGCCGCCAGTACAAGGAGCGCGGCGCCATGATGTACCACCGGAAAACGCACAGCGACGATCTGGAGAGCAAGCTGTACCAGTGCGACATCTGCTCCAAGATATTCAACTCCACGACCAAACTGCAGCGACACATCGTCACGCACACCGCCAACAAGTTCATGCTGCGCTACGAGTGCCCGGTGTGCGCCAACATGTTCCACACGCGCTGGCACATGCAGATGCACCTCAAGTCGCACCAGCGGGAGGGACTTATATTGGAGGAGAATCGCGACGCGGTGCTGGCGATGGTGCTGCAGAACGCGCGCAAGATCCCCAAGCCGGGCGCCGTCGTCACGCCGGGGCAGGCGCTGCTCACGGCGCAGGCGCTCGCCGACGCCGCGCCCGGCGAGCGCTCGCGCATATGCAACATATGCGGACAGGTGTTCCAACACTTCTACTACTTAGAAGAGCATCTCAAAACGCACGGCTCCAAATTAGCCGTCGAAGACTTTGACAAGGAAGAGGAAAAAAAATATACATGCCAGCTAGACGTCGTTGGCGAGTACTCCGGAGCCCTATCGTCTGCATTGCCGTGGATTCTTTCGCGGAGACAGATCCAAGTGCTGTGTGCTAGATTTGGTTCTATTTATCAAGTAGATAGGTACATAAACTCCGTGTGCCTCGCGTTGTTCACTTTGGTTGGGTTGGTTGCCACGCGCCGCGCCGACCTCCGCGCCCGCGCCGTGCCAACCTCCGCGCCCGCGCGACCGTCCCGCGCCGCACCGTCCTCCGCGCCCGCGCCCGCGCCGACGGCCCGTCACCGCCGCCGCCCACCACGAACCGCGCCGCAGCTCCTCCTTCGGCGACCCGCGTTGCCGCCCCCCATTGCGTTTTTATTCAATAGGAGGGACGCAAAGTTCGGTGCGTTCTGCCTACTTCGTCTGGTACATCGCGCGATTTTTGACGTCATCATCTACTTCGTCTGGTACAACGCGCGATTTTTGACGTTGCGCTATGATGAGCGCTTAGGCTGGCTTGGTCGAATGTTCGTGAAGGTTTAG
Protein Sequence: MSTNATDNDPLSQYGLASYNSYQPPFVQTTQLPYAFSNKEYNPQAYTDTQSVPINYVQNVIENVQNVPNIIIQNVPNNVIENVPNSQNVPSNDNVQNNEHLAQDEDGDQMVTIPDEEEDIKPDITLLEKPKRGKKPKGKTSSYWNKKITDKDFKFYGCSVCNIAFQDLTELDSHVTIHSNRITSYDIRLQNLKKRKRLKKEKKRKKKDAKVKNEFESQIEIKPEDGYIGTETADNFNKCTKIKENVVKLNEKNGSLLKNGKDQVYQCFACNKKFALSYYLKIHVRSHTDEKPYTCSYCGENFITASKMGRHVKRIHLAIRNQCRICFRYFNRFELLTKHFDKKHADQKLEGEPYDYNAILPYLTDLELDDQLKPENDTKPKCEDPWDGACPQDSADQDIKVDPDCTAKLEDAKIDEKPANFEFAANKPHIIEEFNLDAVKEEPEVLLGRINMTPGSNDVCAKYSVELDNLDREEVLQYLVMINNDKASQLEEEETRRAPRGGRGTQQVPSESGSQMYEELQVLTNPDLNDDVYEQGSTDDDYEPLVDERAPSDDEEYFPPDTWARSPPHEPPPPAHSPTRNKGPGVCQLCDRSFSSKSYLKVHLRTHTGERPFSCYVCGRGFITASKMHRHVLTHDESWIGEGRIKPEGVVKSEEEADEDVVKKEKKSKKVKSQIDKAKAKLLKKPKRKMDPKVKLGRGRPHNCEYCGKKFLHIETLQVHLKSHEGEELIFKCVYCLEPQLDQESRLEHESTHTGPKPYLCTLCGRQYKERGAMMYHRKTHSDDLESKLYQCDICSKIFNSTTKLQRHIVTHTANKFMLRYECPVCANMFHTRWHMQMHLKSHQREGLILEENRDAVLAMVLQNARKIPKPGAVVTPGQALLTAQALADAAPGERSRICNICGQVFQHFYYLEEHLKTHGSKLAVEDFDKEEEKKYTCQLDVVGEYSGALSSALPWILSRRQIQVLCARFGSIYQVDRYINSVCLALFTLVGLVATRRADLRARAVPTSAPARPSRAAPSSAPAPAPTARHRRRPPRTAPQLLLRRPALPPPIAFLFNRRDAKFGAFCLLRLVHRAIFDVIIYFVWYNARFLTLRYDERLGWLGRMFVKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -