Lhal001104.2
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- znf711
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000002.1:3511534-3520942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0073 0.43 11.3 1.5 2 23 74 95 73 95 0.96 2 14 0.0069 0.4 11.4 0.2 3 23 103 124 101 124 0.95 3 14 0.16 9.3 7.1 0.2 2 23 132 154 131 154 0.89 4 14 0.006 0.35 11.6 4.7 1 23 160 182 160 182 0.96 5 14 4.7e-07 2.8e-05 24.5 4.3 1 23 188 210 188 210 0.98 6 14 0.0014 0.079 13.6 0.1 1 20 216 235 216 237 0.94 7 14 0.073 4.3 8.2 1.6 3 19 257 273 256 278 0.92 8 14 7.9e-05 0.0046 17.5 2.6 1 23 572 594 572 594 0.98 9 14 0.00097 0.057 14.1 3.9 1 23 601 624 601 624 0.97 10 14 0.51 30 5.5 0.4 1 10 632 641 632 643 0.92 11 14 4.5 2.6e+02 2.5 0.8 1 14 653 666 653 676 0.77 12 14 0.0012 0.072 13.7 0.6 1 23 684 707 684 707 0.96 13 14 0.0057 0.33 11.6 4.4 1 23 713 737 713 737 0.98 14 14 9.3e-05 0.0054 17.3 3.2 1 23 743 766 743 766 0.95
Sequence Information
- Coding Sequence
- ATGGAATCAAACTTATCACATTTTAGTTTACCATTTGTGGACGCCGTAGACGGTTCAGATCTAGATTTTAGTAAGAGTCAAGAGTGTGAGTACGATGACCTCCATCCCACATTACCATCTCACGAGTCTTTATTGGGCGCAGACGACGATGTTCTGGCTCAACTACTATCAGTAGATGGACCCTTGGACGAGCCTGATTTAAATGGACCTACCACTTTACACTGTGAAATTTGTAGCAAACAGTTTGACAATGCGAAGAAGTACTATGGGCATTTGAGAGTACACTCCAAGGATAATCTTTGGGCCTGTGATATATGTCCCGAAGAGAAGTTCTCAACAAAACAACAGCTGATGAAACACAGCCTCACTCACAAGCCACTGGATCGAGTGTGGCGATGTACAGAATGTGAGATGTCCTTTGTAGCTCTATGGAGGCTGCAGCAGCATTTATTTGCTAAACACTTAGATTACAGGCCACACAAATGCGAATCTTGTGATAAAACATTCCATAAACTCTCTGATTTAGACAAACATAAGGATATCCATACAGGTGTAAAAACACATGAGTGTAGTGTTTGTAAAACGAAGTTCAGAGACAAGTCTAATTTGAAGCGGCACATGCTTACCCACGGTGATATGAGACCGTATCCTTGCCCGGGCTGTGGTAATAGATTCAAACAGATGGCCTCAATGAAACGACACAGCCAAAACTGCCCAAAGGTCAACATTCAACAAGTGGACTCAAAGAAAGGCATCAGACAGAACTACTGTAGAGTCTGTGGACTCACCTTTCAGTACAAGAGCTCTTTGCTAGAACACTGTGTCAGGGAGCATTCAAACAATCCACCTCAGTTGCCGCCCATACCTCCCAAAGAGGACAAATCGAATCAACACCATGTCCATACTAATCCAACTGTCGACATTAATCGAATTGTCGACAATAATCAAACTGTCGACAATAATCCAACTGTCGACGCTAACCGAACCGTCGATAACATTGTCGACGATATTCTAGCCGCTGAAGACGATTACATGACCATGTCGACGCAAAATGAACTCATCAACCAATATCCCACCGAAGAAAACCACGATAACCTACAAATAGAACTACTGAAAGAAATCAACACAATGCACATACTCGATGACGAATTACTCTACAATGACATTGATTTCGATAGCTTTAACACTATGGACTATGAAAGAAATGAACTGTTCGATTTAAACGACGGCAGAAGTATGGATCACGATTTAATGAGCGCCTTGAATCAAGTCAAGGATTTTCCAGAATATCTCAATCCACCAGATATCATGACTAACACAGACAAAGTCAATGAATTTCTAGTTAACCCACCGGTTACAGTCAATGAATGTTCAACCATATTTGAGAGCGATGTCGATTTAGAAGCAAGTACGAATTTAGCAGCGAATCTTAACCAGCTAATAGGAGAGAATACAGTTCAGTACATTTCAACTGAACATGATGATACGTTTATTATAAGCTTGAACAGTGAAATTGATGCAGAACAGCTGACTGATATGTTAAATATAGGTTTAGATAGCAAAAATATACCAGAAAATGATAAAAATAAACTAATGGTTCCCCAAAATAAAGAAGCGCCGGAAACTATTTTTGTGAAAGTTGATAAGCCGGATGAAACGGTGGAATGTGAAAAGGTGCCGAAGAAAAAACCCGTTGGCAAAACAAGGGTGCGGTTTGTGTGTTTGAAATGTAACAAGATTTTTAAAAAGAAGTATAATTACATTTCACATAGAGCGACACACGACGCAGACCTCCGTCAACACCAATGTAAGCTGTGCCAACAGTGGTTCAGCTACAAGTCCACTCTCAACAAGCACATTAGAAACATGCACACGCCGCTCGTGAAGACTGCGCACACTTGCGACACTTGCGGAAAGAACTTTCCCGCTCTTTGGATAAGCTATGTCAGTTCCAAATTCCAATGCAAGCTGTGCCGCCAGTATTTCGGCTACAAGTCCATTCCCAACAAACACATTATAAGCATGCACACGCCGCTCTTAAAGACTGCGCACACTTGCGAAACTTGCGGGAAGAACTTTCCCGCTCTTTGGATGATGAAGAGACATATCGAACGTGACCACGAAATGCTGACTCCATACCAATGCAAAGAGAAGGATTGCGGAAAAAAGTTCTACAAGAAATGCGATATGGATGTCCATTTGAGGTTCCACACCGGTGAAAAGCCGTACACCTGTATTGTTTGTAACAAATCCTTCAAAACTACCTCTCATCTCTCTAGACATACGAAGATAGTTCACAGTTCCAAAATGTAA
- Protein Sequence
- MESNLSHFSLPFVDAVDGSDLDFSKSQECEYDDLHPTLPSHESLLGADDDVLAQLLSVDGPLDEPDLNGPTTLHCEICSKQFDNAKKYYGHLRVHSKDNLWACDICPEEKFSTKQQLMKHSLTHKPLDRVWRCTECEMSFVALWRLQQHLFAKHLDYRPHKCESCDKTFHKLSDLDKHKDIHTGVKTHECSVCKTKFRDKSNLKRHMLTHGDMRPYPCPGCGNRFKQMASMKRHSQNCPKVNIQQVDSKKGIRQNYCRVCGLTFQYKSSLLEHCVREHSNNPPQLPPIPPKEDKSNQHHVHTNPTVDINRIVDNNQTVDNNPTVDANRTVDNIVDDILAAEDDYMTMSTQNELINQYPTEENHDNLQIELLKEINTMHILDDELLYNDIDFDSFNTMDYERNELFDLNDGRSMDHDLMSALNQVKDFPEYLNPPDIMTNTDKVNEFLVNPPVTVNECSTIFESDVDLEASTNLAANLNQLIGENTVQYISTEHDDTFIISLNSEIDAEQLTDMLNIGLDSKNIPENDKNKLMVPQNKEAPETIFVKVDKPDETVECEKVPKKKPVGKTRVRFVCLKCNKIFKKKYNYISHRATHDADLRQHQCKLCQQWFSYKSTLNKHIRNMHTPLVKTAHTCDTCGKNFPALWISYVSSKFQCKLCRQYFGYKSIPNKHIISMHTPLLKTAHTCETCGKNFPALWMMKRHIERDHEMLTPYQCKEKDCGKKFYKKCDMDVHLRFHTGEKPYTCIVCNKSFKTTSHLSRHTKIVHSSKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -