Basic Information

Insect: Lobophora halterata
Gene Symbol: -
Assembly: GCA_932525835.1
Location: CAKOAV010000028.1:693568-704768[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00067 0.039 14.6 0.3 1 23 440 462 440 462 0.97

2 13 1.2e-05 0.00071 20.0 1.6 1 23 468 490 468 490 0.97

3 13 0.0057 0.33 11.6 5.6 1 23 494 516 494 516 0.96

4 13 0.26 15 6.4 5.4 1 23 527 550 527 550 0.96

5 13 6.3e-05 0.0037 17.8 0.8 1 23 557 579 557 579 0.97

6 13 0.00014 0.0081 16.7 1.1 1 23 600 622 600 622 0.97

7 13 0.00063 0.037 14.7 0.6 1 23 653 675 653 675 0.95

8 13 0.9 52 4.7 2.7 1 13 697 709 697 712 0.90

9 13 9.2 5.4e+02 1.5 5.1 1 23 1111 1133 1111 1133 0.95

10 13 0.0001 0.006 17.1 1.2 1 23 1139 1161 1139 1161 0.97

11 13 6.6e-05 0.0039 17.7 3.4 3 23 1169 1189 1167 1189 0.97

12 13 2.4e-05 0.0014 19.1 4.0 1 23 1195 1217 1195 1217 0.99

13 13 1.8e-06 0.00011 22.6 1.9 1 23 1223 1245 1223 1245 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00067	0.039	14.6	0.3	1	23	440	462	440	462	0.97
2	13	1.2e-05	0.00071	20.0	1.6	1	23	468	490	468	490	0.97
3	13	0.0057	0.33	11.6	5.6	1	23	494	516	494	516	0.96
4	13	0.26	15	6.4	5.4	1	23	527	550	527	550	0.96
5	13	6.3e-05	0.0037	17.8	0.8	1	23	557	579	557	579	0.97
6	13	0.00014	0.0081	16.7	1.1	1	23	600	622	600	622	0.97
7	13	0.00063	0.037	14.7	0.6	1	23	653	675	653	675	0.95
8	13	0.9	52	4.7	2.7	1	13	697	709	697	712	0.90
9	13	9.2	5.4e+02	1.5	5.1	1	23	1111	1133	1111	1133	0.95
10	13	0.0001	0.006	17.1	1.2	1	23	1139	1161	1139	1161	0.97
11	13	6.6e-05	0.0039	17.7	3.4	3	23	1169	1189	1167	1189	0.97
12	13	2.4e-05	0.0014	19.1	4.0	1	23	1195	1217	1195	1217	0.99
13	13	1.8e-06	0.00011	22.6	1.9	1	23	1223	1245	1223	1245	0.99

Sequence Information

Coding Sequence: ATGTCAGGTCTCAGCGTTTGTAGAATCTGCTTAGCCGGCAATATCAGGATGTGTTCACTAGCCAACACTCCACTCGAGGATGTCTATGAGAAAGTTACTAATAATCAGTGGGATACTAAAAGAAGACCAGCTTCAGTATGTTACATCTGCCACTCGCAGCTGAAGAACTGCCTCCAACTGCGGAAGAAAGCCAAACTGTCAGAGGAGATCTTTGCACAGCTCTTGGATGCAGAGGAGGTATTTGAGTTCTCTGAAGAGACTGTTACAATCCTCAACAAGCGTAAGATGCAGAATTTGACATCAGTACTTCTAGCAGCGTTCACCATCGACGGCTGCACAAGGGATGACACTGATGATATAAAAGAAGAACCTGTTGAAAATAATGATGTTGATATTAATGATCCAGTTAAAAACAATGAAACTGTTGAAAATAATGACTCAGTTGAAAATAATGAGCTCGTTGGAAATAATGAAGCTATTGAAAATAATGACACTGTAGAAACTTATGAACTGTCTGATGAGTCTGACGATAATAATGATGATTTACCGAACAAGGAAATTGTAGATGATAATGAATTTGAAAAAATCATGGCGGCTGTTGAAGAGATGGAAAGAGAAGATACTGCAGCAACTGAAAACATGGAAGCTGACATCCAGGAAACTCCTCGCAAGCGAGGTCCATCCTCAAAACCTCTGAAAAGAAAATCAAGAGCTAACGAAGAACATGTATCTGATAATGAGTTTTCAGAAGAGACAGCTACAACATTCAGCGATCGGGACGCACAGGACTTCGTAGCTGTGCCTTCTGAAACAATAGCTATCACCAATATTACAAATAATATTGAAATCAAAACTGAACTAATTGATAATATAATAACTATTAACGAGGATGTTGAAATCGAGGAAAATTCTGACAATACAGGACTTGGTACTGAAGATATAGAAATAGAAGATACACTACTTGAAGAAATTGACGATGTTATACTGAAATGTTCTGACCAGCCACCAAGGTTGAAAGGAGAAAATAGTACATTTAAGAAGGCGGTAAAAATACCCTACGTAAAACTGACACCTATTCAAGTAGAAGTCGAATCAAACAAAACAAAGGTTGAAACTGCAAAATCAGCTTTGAGTATCATTGAGCAGTTTTGTGTAGCCAATCCAAAGGGATCTGTTTCTATGAAATTTAAGTTTGACAATATGCCCGGACTGCCCAGTCTTTTGAAAAGTGATGGAAAAATTGAAATGCTTAAAAATCACGAAGGATATCCCATTGGTATCATCAAACAAGATGGCGGAACGTCCGTTCAAAATGCATATTCCTGCGGGTATTGTGAGAAGTCGTTTGTAGCGAAGACCGAAATGGTGGAACATATGAAAGACCACGGCACGGGAACCCCGCACTCGTGTTACGAATGCGGCAAGACTTTCAACATACAGGACGATCTACTATTGCACATGAAAACTCATGACAAGTCATTCGCTTGCAAGTTTTGCACTAAAACATTTAGCAAGTTGTGTTACTTGAAACGTCACGAAAAAGCGCACAATCGCGATGATGTTCATGTGGACAAACCATTCGCTTGCAAGTTATGCAGTAGAACGTTCAGTTGGCTGGCTTGTTTGAATAATCATCACAGGCGAAAGCATATGAAAACTGACAAGGCATTTGCTTGCAAGTACTGCACTAAAACTTTTAGTGGGATAGCATATTTGACAAATCATCTAAAAGTTCACAGGCAAGAGAATTTTATCAAAACTCACTCTGAACCGAAGGACATAAACACAGACAAGTCATTTGCTTGCAAGTACTGCACTAAAACTTTTAGTGGGATAGCATATTTGACAAATCATGAAAAAACTCACAGAATTAACAAACTCAAGTCATTTGCTTGCAGGCGCCAGAACTTCATCAAAATTGGCTCCGAAACAGAGGGGATAAACAAATATAAGTCATTTGCTTGCAAGTACTGCACTAAAACTTTTAGTGGGATAGCATACTTGACAAATCATGAAAAAGCTCACAGGCGAGAGCAAATTAGGGAAATTCGTTCCGAACTTATGGACACCAAAACTGACGACAAGTTATTTGCTTGCAAGTTATGTACTAAAACTTTTAAACAAAACTGTGAACAATCAACTAATAGTAGCGAGAAGTTGGTCAAATATGAGAGTGAACAAAAAACCAATGATGGCAAAAAGGACGTGAAAAATAATCGTGAACAAGCTAATGGCAGTGAGAAGCCGATGGAGTATGATTGTGATCAAGAAAGCAAAAGTGGAAAAGAACCAAATAAACATCCTAACGAAGAAGAAATCAACAGTGGAGAAGAATTGACGGATTATAGCAGTGAAACAGAAAGCAATTGTAGAGATACACCGATGAAATATAACGATGATAAAGAAAGTCTCAGTGGAGAAGAGACGACTAAATATAACTGTGGTAGAGAAAGCGATAGTGAAGAGGATTCGAAGGATAATAACAGCGAACAAGTAAACAATGATAGAAGAGTGGAACCGATGCAATATAACGATGATCGTAAAAGCCATAGTGAAGAAGATTTGACGGATTATAACAGCGAACAAGAAAGTAGCCGACAAGAAACGGCAGAATATATTTGTGGAAAAGAGAGGCTTAGTTGGAAAGAGTTGTTGGGGCGTTACAACAAACAAAAAGGTTGTAGCGCAGAAGAGATAAAAATGCATAGTGGCGAAGAGAAACGTAACGGCGAAGAGGAAACCCTTAGTAAAGAAAAAATAACAGAATGTAACGGTGAACGAGAGAGCTCTAGTGAAGAGGAAATCACGAAATGTAACGATGAACAAGAGAGCTATAGTGAAGAGGAGATAATGGAATGTAACGATGAACAAGAAAGCTATAGTGAAGAGGAGATAACGGAATGTAACGATGAACAAGACTATTATAGTGGAGGGAGTAAAACGGATTGTAACGATGAACAAGTGAGCTATAGTGAAGAGGAGATAACGGAATGTATCAGTGAACAAGACTGTCATAGTGGAGAAAATATAATGAAATGTAACATTGAACAAGATGGCCATAATGGAGAAAAAATAATAGAAGGTAACCGTGAACAAGGACGGCATAACCGAGAAGAGATAACGGAATGTAACAGTGAACAAGAGAGCCATAGCGAAGAAAATATAACTGAATGTAACGGTGAACAACCAATCAATAGTAACGAGAAGCCAAAGGAATATGAATATGAACAAGAAATGAATATCAATTTGTTGCCAATAAAATATGAATTTGAAGAAAACCTTTACAAGGAGACTATAGACGGACAAGAAACCGAAGAAAATTCGATGAAATACAAATGTGTATGCTGTACTATGAGTTTCTCAGACTTACGtagtttgaagtgccatattacaatacacacaggctcaaaaccgttcatatgcaacttatgtctgaaaacattcagccggttggaatatttacagcaacattcaagaatacatactggagaacggccgtacggttgtctacaatgtcctaaaagattctcccaactaagtcacttgcaacagcataaaagacgtcacagtggtgagaaaccgtatgaatgtaaactctgcaaaaggaggttcgctcaacttagtcatttgcagcaacacgaacgtaaacacagtgggttgaaaccgtaccaatgtgaaacatgctttgagagatttcgccagctcagtaatttgcaacagcatatgaaaatacatatggctgataaaccatTAAATATAATCTAG
Protein Sequence: MSGLSVCRICLAGNIRMCSLANTPLEDVYEKVTNNQWDTKRRPASVCYICHSQLKNCLQLRKKAKLSEEIFAQLLDAEEVFEFSEETVTILNKRKMQNLTSVLLAAFTIDGCTRDDTDDIKEEPVENNDVDINDPVKNNETVENNDSVENNELVGNNEAIENNDTVETYELSDESDDNNDDLPNKEIVDDNEFEKIMAAVEEMEREDTAATENMEADIQETPRKRGPSSKPLKRKSRANEEHVSDNEFSEETATTFSDRDAQDFVAVPSETIAITNITNNIEIKTELIDNIITINEDVEIEENSDNTGLGTEDIEIEDTLLEEIDDVILKCSDQPPRLKGENSTFKKAVKIPYVKLTPIQVEVESNKTKVETAKSALSIIEQFCVANPKGSVSMKFKFDNMPGLPSLLKSDGKIEMLKNHEGYPIGIIKQDGGTSVQNAYSCGYCEKSFVAKTEMVEHMKDHGTGTPHSCYECGKTFNIQDDLLLHMKTHDKSFACKFCTKTFSKLCYLKRHEKAHNRDDVHVDKPFACKLCSRTFSWLACLNNHHRRKHMKTDKAFACKYCTKTFSGIAYLTNHLKVHRQENFIKTHSEPKDINTDKSFACKYCTKTFSGIAYLTNHEKTHRINKLKSFACRRQNFIKIGSETEGINKYKSFACKYCTKTFSGIAYLTNHEKAHRREQIREIRSELMDTKTDDKLFACKLCTKTFKQNCEQSTNSSEKLVKYESEQKTNDGKKDVKNNREQANGSEKPMEYDCDQESKSGKEPNKHPNEEEINSGEELTDYSSETESNCRDTPMKYNDDKESLSGEETTKYNCGRESDSEEDSKDNNSEQVNNDRRVEPMQYNDDRKSHSEEDLTDYNSEQESSRQETAEYICGKERLSWKELLGRYNKQKGCSAEEIKMHSGEEKRNGEEETLSKEKITECNGERESSSEEEITKCNDEQESYSEEEIMECNDEQESYSEEEITECNDEQDYYSGGSKTDCNDEQVSYSEEEITECISEQDCHSGENIMKCNIEQDGHNGEKIIEGNREQGRHNREEITECNSEQESHSEENITECNGEQPINSNEKPKEYEYEQEMNINLLPIKYEFEENLYKETIDGQETEENSMKYKCVCCTMSFSDLRSLKCHITIHTGSKPFICNLCLKTFSRLEYLQQHSRIHTGERPYGCLQCPKRFSQLSHLQQHKRRHSGEKPYECKLCKRRFAQLSHLQQHERKHSGLKPYQCETCFERFRQLSNLQQHMKIHMADKPLNII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -