Lhal017187.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000046.1:305666-309442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00093 0.054 14.1 4.3 1 23 153 176 153 176 0.97 2 19 0.00018 0.01 16.4 1.0 1 23 185 208 185 208 0.97 3 19 0.0028 0.17 12.6 0.6 2 23 221 243 221 243 0.97 4 19 0.0024 0.14 12.8 4.6 1 23 252 275 252 275 0.97 5 19 0.00019 0.011 16.3 3.0 1 23 288 311 288 311 0.97 6 19 1.8e-05 0.0011 19.5 0.5 2 23 340 362 339 362 0.96 7 19 9.9e-05 0.0058 17.2 1.0 2 23 372 394 371 394 0.96 8 19 0.15 8.6 7.2 0.8 2 20 399 417 398 419 0.91 9 19 0.0018 0.1 13.2 0.4 2 21 424 443 423 446 0.94 10 19 0.34 20 6.1 3.7 3 23 456 477 455 477 0.96 11 19 4.8e-05 0.0028 18.2 3.2 1 23 482 505 482 505 0.92 12 19 0.0019 0.11 13.1 4.0 1 23 516 539 516 539 0.97 13 19 0.0093 0.55 11.0 0.9 1 23 557 580 557 581 0.92 14 19 1.6 95 3.9 0.3 2 23 587 607 586 607 0.85 15 19 0.043 2.5 8.9 3.8 2 23 613 634 612 634 0.97 16 19 4 2.3e+02 2.7 0.9 2 23 641 664 640 664 0.91 17 19 4 2.4e+02 2.7 0.3 2 23 672 693 671 693 0.92 18 19 0.15 9 7.1 1.7 1 23 700 722 700 722 0.97 19 19 0.13 7.9 7.3 2.4 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGTCACTACTAAGAGAAAGCAATATAAAAGTAGAGAAAGAGGAACGTAAAGATCCAACCAGCTTTCTACCAGAAGAAGAGATGTGCTATGAGATAAAGAAGAAAAAAAAGAAGAAGAAAAAGAAAGAGCAAGAGGACCCCTTCAAGGACATAGAGGAAAAGTCTACCATATCCAGGGTGCCTGATATAACGGCTCTGGATCCAGATCTTTGTGACTTGGGCGCCATATTCGACCCTGAAGTCACCATCAAGGTTGAGAACATCGAAGTGGATTTAAATGTTGATGATATCTATGACAACGAATTACCTTCAGGAAACCTAAAAGAAGAGCCCGAGGTTAAACTAGAAGACCAAAACAGGGATGCTGTACTCCTAACCTTCCACAGCGTCATCAGCGAAAAAGTCATCACCGACCAAATCCTGTACGGAGAGAAAACACACCCGTTCCCCGGAACCCATTACTGTGATGTCTGCCATCTTGTATTTAAAACTGCAAAATCTTTAGACACACATCAAAAAAGGCAGCATAAGCATTTTAGAAGGCATTTCAAGCATGTATGTGATATTTGTGGGATGTCATATGAGTTTAAGAATAGTATGGTTGCGCATATGCGGAGAAAACATGGACCAGGAGCCAGTACTGAAGATAAGATTGAACGAACATGTGAAGTTTGCTCATTAGTGTTCAAAGGATCAGCCAGACTTCGGATGCATATGCAAAGAAAACATGGAACGTACGAAGACTTGTTCACACACAAATGCAAATACTGCGGATTAACATATGATAAAGAATGCAGCTTAGTTGCCCATATAAAAAAGAAACACACGTTTAAGAAAGAAAAACCGAAACCAGAGGAGTTTTACAAATGCCCGTTCTGCGAAAGAATGTTTAACAAAAGAGAAACTTATACCCGACACGTTCAAAGGAGACATAGTGTGAAAGAGGACGATGTGAAAACCAAAATGGCGGAAGAAGAATTCGCTAAATCTCACAAAAACGAGCGTACGGGAGAATTGACTTGCAATCAATGCCAGTTATCATTTTCATCGGTTGGTTATCTCAAATGGCATATGAGACGGATACATAATGCTGTGATACCTGATTTCAGACTGAAGTGTAGGATTTGTAACATGTCGTATGCGAAAGCTGAAAGTCTGAAACGCCATGTTAGAAGAAAACATGGCACAGGAACATATTGTACAGAATGTAATCGCAACTTTGAAAGTATGGAGGCGTTTCTCAGTCATACCCACTCTAAAGATGTCATGGAATGTACTATTTGCGGGTTAATTTTTGGCAGCAAAGGTGGCCTAGCTAAACACTTACGTTGCACACATAAAATAGAAGATGCTAAAACAGTTTTCTGCAATATTTGCAATGCTGGATTCCACCACAAGCGGCAACTAAAACCTCACTACAACCGGGTTCATTTAGAAGTGTCTTATCCATGCAAGTTTTGTCCAAAAACATTTAAGAGAAGAGAGAGTTACCGGAGGCATGTCTTATTCAAGCATCAAACGAACACAAATATAGAAGAAAAAACACATCAATGTGATAAGTGTCCGGAAAAATTCAAGGATGAATTTGAACTCTGCACTCATAATAATACAGTTCACGGGGAGGTTTTGCCAGTCATTAAAAAAGAAGAAGACTTTGTAAAAGGCACATATAAATGCACAAAATGTCCAGATGAGTACAGTAATTGGGAATTGTTACGCGTTCATTTTGAACAAGTCCATCATATGACAGAAGAAATGCAGTGCCAAGTATGCGGAGACATGATGAGCCGAGGAGAATTAGTCAAACATATGAAATTGCACAACGAAATCGAAGTAAAATGTAGGTTCTGTGATTACAAATGTAAGGACAGAGTGAGCATGTCTTCACATATGCTAAGACACAAAAATGCAAACACAATACAATGCGAATACCCCAATTGTAAATACAAAACGTTCTTCGAAGATGCAATGTTGAAGCATACGAAGAAACACGAAGATATAGGCGTTAAAATGCAGTGTGCGAGTTGTCCGTTTCAAACTATGAATAAATATCTTTTGAGGTACCACGAAGAAGCGCATGCTACAGGCAAGAAACGGTATCAATGTGACCAATGTTCATATGCTACAACTTTACCAGCATGTCTCGTACAACATAAATACAAACATGCTACTGTAAAAAGGTTCAAATGCCAAGTATGTCCGTTCGCAACGAAGTATAACACTTCTTTGCGATTCCACGTCCGAAAAAAACACTGTGATTTACCAATTATTAATAAGGAAGAAGTATAG
- Protein Sequence
- MSLLRESNIKVEKEERKDPTSFLPEEEMCYEIKKKKKKKKKKEQEDPFKDIEEKSTISRVPDITALDPDLCDLGAIFDPEVTIKVENIEVDLNVDDIYDNELPSGNLKEEPEVKLEDQNRDAVLLTFHSVISEKVITDQILYGEKTHPFPGTHYCDVCHLVFKTAKSLDTHQKRQHKHFRRHFKHVCDICGMSYEFKNSMVAHMRRKHGPGASTEDKIERTCEVCSLVFKGSARLRMHMQRKHGTYEDLFTHKCKYCGLTYDKECSLVAHIKKKHTFKKEKPKPEEFYKCPFCERMFNKRETYTRHVQRRHSVKEDDVKTKMAEEEFAKSHKNERTGELTCNQCQLSFSSVGYLKWHMRRIHNAVIPDFRLKCRICNMSYAKAESLKRHVRRKHGTGTYCTECNRNFESMEAFLSHTHSKDVMECTICGLIFGSKGGLAKHLRCTHKIEDAKTVFCNICNAGFHHKRQLKPHYNRVHLEVSYPCKFCPKTFKRRESYRRHVLFKHQTNTNIEEKTHQCDKCPEKFKDEFELCTHNNTVHGEVLPVIKKEEDFVKGTYKCTKCPDEYSNWELLRVHFEQVHHMTEEMQCQVCGDMMSRGELVKHMKLHNEIEVKCRFCDYKCKDRVSMSSHMLRHKNANTIQCEYPNCKYKTFFEDAMLKHTKKHEDIGVKMQCASCPFQTMNKYLLRYHEEAHATGKKRYQCDQCSYATTLPACLVQHKYKHATVKRFKCQVCPFATKYNTSLRFHVRKKHCDLPIINKEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -