Lhal017696.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000047.1:1118648-1121716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.67 10.7 0.4 1 21 61 81 61 82 0.95 2 17 0.44 26 5.7 0.1 3 23 111 131 110 131 0.94 3 17 0.15 8.7 7.2 0.5 2 23 154 175 153 175 0.97 4 17 0.0038 0.22 12.2 0.2 1 23 179 201 179 201 0.96 5 17 0.0042 0.25 12.0 0.4 1 23 206 229 206 229 0.83 6 17 0.00057 0.033 14.8 0.7 1 23 235 258 235 258 0.96 7 17 0.0095 0.56 10.9 1.1 1 23 265 288 265 288 0.97 8 17 1.8e-06 0.0001 22.7 0.7 1 23 295 317 295 317 0.96 9 17 0.0096 0.56 10.9 7.1 1 23 323 345 323 345 0.98 10 17 0.047 2.8 8.7 0.1 1 23 442 465 442 465 0.93 11 17 0.25 14 6.5 0.1 2 23 492 513 491 513 0.96 12 17 0.014 0.8 10.4 0.4 1 23 535 557 535 557 0.98 13 17 0.00036 0.021 15.4 0.5 1 19 561 579 561 581 0.95 14 17 4.1 2.4e+02 2.6 0.1 1 23 591 614 591 614 0.94 15 17 0.015 0.88 10.3 0.4 1 23 620 643 620 643 0.90 16 17 0.0013 0.079 13.6 1.6 1 23 650 673 650 673 0.88 17 17 0.00084 0.049 14.2 4.3 1 23 684 706 684 706 0.98
Sequence Information
- Coding Sequence
- ATGGTAGGACAACATGGAGTGACTACCGACGATACCTTGATAAAAGTATGTTTAGAAGTCAAACCAAAACCAAAGTACCAGAGGAGTGCAAGAGCCGAATCCCGCATTGCAACCAAGAAGAATGCCACCTCCATTCTCCAATGCTGGACACTCACTCCATTCAGATGGAAAAAGAATAGATTCAAGTGCGCCTACTGCGAAATCAATTTTATCGACTGCAACGCACTCAGAGACCACGTCAAGCTCTGTTCCACAAAACACGAAGTTAAAGACATTTACGCCAAGTTTAAAGAAATGCCGCTTATCAACGTTGACACAACTGCGGCTATGTGTTTCTACTGCGCCGCTCCCTTCAGCAATGTCGCACAAATGCGTAGTCATGTCGCGCAACATGGCCTCGATTTCGACCCTAATCACCCCGATGGAGttctgccgttctatttagacaaagaactttggaagtgtgtcatatgcgaaaacttgttcaacaacttcttgaaactttacgagcatatgaacactcattaccagcattacatttgctccacttgtgggaaagggtatatgacCGCACCACGGCTAAGGAAGCATTCGGAAGTGCACGTCTCCGGTACATTCCCTTGTCAGTATTGCGGAAAGGTGTTCACCATGCGCACCGCCAGAGATTCTCATAAAGCGTCAGCACATAATAAATGCTCTCGCTACGAATGTCCCTACTGCTCCATCCGATTCGATAGCTACTACAACCGCATGAAGCATTTGAACGAGGCCCACAGCGAGAAGGAAACCGTTTACAACTGCGCTCATTGCGATCTAAGTTTTCAAACGAGCGGTAAACGAGCCAGCCACGTACGGTCCATTCATTTTCCTCCGCAGCATAGGTTCAGTTGCTCCATCTGCGGGTGGAACTTCAAAAGCAACTACGAACTGAAACGACACGTTGTGAGGCACACGAAAGAGAAAAGCTTCCATTGTTATGTTTGCGGCAAATCATGCCTCCGAAAGAAAAGTTTGACGACCCATTTAAAGACGCACCAAGTCGTCTACAATACGCAGATGGAAGAGTCAGGCCCCTTTGACGTCAACTGCAAGTGGTGTGGTGTAGGTTCAGTCAAAGAAGCACTCTCAATAGTGAGTGTGGCTAACAGTGGTAGGCGATTGAAGGAAAATGTAAGCGAACGTCAAATGCGTAGGCGACGCCGGGCCAACAACGAGTTGCCAGAAGAATCTGAGAAGCGCATCGTAAAGACTATGATGAGACGGAACGCAATTACGCTCCTAGAATGCTCCACTGCCTGGGCTTTCCGCTGGTTCCACGGTGCCTTCTACTGCGCCTACTGTGATGTCAAATTCGTTGACATTCAACCACTTAGAGACCACGTCTTGAACACTCATTTAAACGAGCCGCTATCAAAAAGAGTTTTCTCAAAGCTCAGAGAAAACAACATGCTCAAAATAGATATAACTACACTTCAATGTAGGATCTGCAATACAAGTCTCGATGGAATACCGCTTCTTAAAAATCATTTGGAATCACATGGCAGAATTTTCCAAGCAAACTATAGCGATGGAGTGCTACCCTTCAAACTAAACGTCCGCGGGTTTTCATGCCAACTATGCCCATCTAACTTCCCGACTTTTGCCAAAATCAATgaacacatgaacactcactttcaaaactatgtttgcgacacgtgtgggaagggattcgtATCTAAATCCAGATTCCGCGCTCATGCTCATGCTGGGCTCATCCCGGTAAAGGGTAGTTTTCCTTGCGGCTTATGTGAGCAGATACTGGACTCCAGGGCGGCGAAAACAAGCCATCGGTCGCGGGTTCATCGCAAGGGAGTTAGATACACTTGCCCGCGTTGTACCGAAGTATTCACCACTTATAACGCCAGGTCCAATCATTTGGTCAATATCCACGCTCAGCAGAGCATGGAATATGTCTGTGGTACTTGTGGCAAATCCTTCAATACGAGCTCGAAACGTGCAGCGCATTGCCGATTGGTCCACACACATATGACACCGTCGCAGCAGGAATCACATCAGTGCTATCATTGTTCAGCGGCTTTCGCAACAAAAACTAAACTTGTCAGGCATTTGAAATCACATAACTCGTATGATGTTGTACTGACTACGCCACTGCATCAATAA
- Protein Sequence
- MVGQHGVTTDDTLIKVCLEVKPKPKYQRSARAESRIATKKNATSILQCWTLTPFRWKKNRFKCAYCEINFIDCNALRDHVKLCSTKHEVKDIYAKFKEMPLINVDTTAAMCFYCAAPFSNVAQMRSHVAQHGLDFDPNHPDGVLPFYLDKELWKCVICENLFNNFLKLYEHMNTHYQHYICSTCGKGYMTAPRLRKHSEVHVSGTFPCQYCGKVFTMRTARDSHKASAHNKCSRYECPYCSIRFDSYYNRMKHLNEAHSEKETVYNCAHCDLSFQTSGKRASHVRSIHFPPQHRFSCSICGWNFKSNYELKRHVVRHTKEKSFHCYVCGKSCLRKKSLTTHLKTHQVVYNTQMEESGPFDVNCKWCGVGSVKEALSIVSVANSGRRLKENVSERQMRRRRRANNELPEESEKRIVKTMMRRNAITLLECSTAWAFRWFHGAFYCAYCDVKFVDIQPLRDHVLNTHLNEPLSKRVFSKLRENNMLKIDITTLQCRICNTSLDGIPLLKNHLESHGRIFQANYSDGVLPFKLNVRGFSCQLCPSNFPTFAKINEHMNTHFQNYVCDTCGKGFVSKSRFRAHAHAGLIPVKGSFPCGLCEQILDSRAAKTSHRSRVHRKGVRYTCPRCTEVFTTYNARSNHLVNIHAQQSMEYVCGTCGKSFNTSSKRAAHCRLVHTHMTPSQQESHQCYHCSAAFATKTKLVRHLKSHNSYDVVLTTPLHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -