Lhal000419.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000001.1:5852849-5858888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.075 13.7 1.3 1 23 200 223 200 223 0.96 2 11 0.0073 0.42 11.3 6.0 1 19 283 301 283 306 0.96 3 11 0.9 53 4.7 1.3 6 23 316 333 314 333 0.95 4 11 0.0007 0.041 14.5 0.4 2 23 340 361 339 361 0.96 5 11 1.4e-05 0.00079 19.9 2.8 1 23 369 391 369 391 0.97 6 11 0.00094 0.055 14.1 1.6 1 23 400 423 400 423 0.96 7 11 0.00023 0.013 16.0 0.2 1 23 429 451 429 451 0.97 8 11 2.5e-07 1.5e-05 25.3 2.4 1 23 457 479 457 479 0.98 9 11 0.0011 0.066 13.8 1.0 1 23 484 506 484 506 0.98 10 11 6e-06 0.00035 21.0 4.0 1 23 512 534 512 534 0.97 11 11 7.8e-05 0.0046 17.5 0.6 2 23 541 563 540 563 0.95
Sequence Information
- Coding Sequence
- ATGGCAATGAAGTATTTGTGTAGATTGTGTGCAAAAGAAGATGTATTCTCAAAGGATTTATTACTCGAAAACAATAAAGGTGTCCTGCAAATGATAAAAGATTTCATACAAATCATTGTTAATGGTAATGATAATTTACCTACCAGAATCTGCTTGAACTGCGAAGAGAAGATGGTCACCTTTCAGCTGTTTGTCTTAGAATGTTACAAAGTTCAAGAATTACTACAACAAATGACTACAGGGAATAAAAACCCACCAATTAAAATAGAGTTCAGTACAACTGATGCAGAAGCAGTAATCAAATCTGAAGTAAAATGTGAAATGTCTGCTGAGATGGCGGCTGAAGAAATAGTCAGTGCATTGCATAGTGAACAAACACTACTCTCGGAAGTGATTTATGAAAATGACTATGATGATGATGTTGCTGACGATGATGTTGCTGATGATGATGTTGATAATGATGTTGATGATTACACCGATGATATCACTATAGCTACTCTGAAGAAAATGAAGCAAAAAACGAAACCCCCAACTGATTCCACCGCACTCAATGAAATTCTTAAATCTCCTAATGTTAAAGTCAAGGATCTTGTTAAGTTTGTATGTGTTGTTTGTGATGAAAAATTAAAATCTTGGTCATGTTTGCGAGTTCACTACATCAAGAAACATAAAAGTGAGCCGATAGTGCTTTGCATGTGCGGCTTTGAAATAAGATCTAAGAGTGTGCTCTACAAACATGTCACTGATCACAAGCTGGAAAGTAAGAAATTAAGGAAAGACAATACAAATGATGATACACAGGAGGATATCAAGTATTCTAATCTTAATGTGAGAGATTTTGTCAAATTTAAATGTCATGAATGTGCAAAGGTATGCTCCAGTTGGTATAGTTTAAAGGCCCACTGTGACGAGAAACATGGTACATCACCTGTAGTCCAATGCAGCTGTGGAATCACCCTTAAATCCAAATCTGTCTTGTACAAACACATACATGATCATAAAAACCCTAATATTTTGTCATGTGATAAATGTCCAAAAGTATCAAAAACCATAGCTGCTCTAAACAAGCATAAAATGCGTCATGTCCCTAAATCAGAACGAAAGTTCTGTTGCTCTGGGTGCGACAAAATATTTAGAACAAGAGACGCTTTGAAATCACACGAGAAGTCACATATTCCGATACAAGATCGAAAGATCTATCATTGCGAAATTTGTAATCTAAAATTCACGACGCGATCGTCCGCCGCGTCGCACAAGAAGGTGGTCCACGAGAAGATAAAGGGCTACGTGTGCGACCTCTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATCCACAGCGACGACAAGCCCTTCGTCTGCAACAAGTGCTCCAAACCTTTCAAAACCTACTCAAACCTGAAAACTCACATGGACACTCACGAAGACACGGCTTACGAGTGCTACATCTGCCGACGCATACTGAACAGCCGCCGCACGCTGCGCAAACATCTGCTCGTGCACGACGACAAGTGCCGCCACATCTGCTCCTACTGCAACAAGCCTTTTAAGAGACGGCAGACTCTCAAGGTCCACATGTATACGCACACAGGCGACAAACCTCTGACGTGCAAATGGTGCGACGAGCGGTTCGCGTACGCGTCCACTCTGCGCTCGCACCGCCTGCGCAACCATCCCGACAAGATGGTGCACCACAACGTGTCGCACAATGCATACAGTTCCTACGTCTCGTCGGGAGAGGTAACAACACTACATTCATACTACGCATTCTCATGA
- Protein Sequence
- MAMKYLCRLCAKEDVFSKDLLLENNKGVLQMIKDFIQIIVNGNDNLPTRICLNCEEKMVTFQLFVLECYKVQELLQQMTTGNKNPPIKIEFSTTDAEAVIKSEVKCEMSAEMAAEEIVSALHSEQTLLSEVIYENDYDDDVADDDVADDDVDNDVDDYTDDITIATLKKMKQKTKPPTDSTALNEILKSPNVKVKDLVKFVCVVCDEKLKSWSCLRVHYIKKHKSEPIVLCMCGFEIRSKSVLYKHVTDHKLESKKLRKDNTNDDTQEDIKYSNLNVRDFVKFKCHECAKVCSSWYSLKAHCDEKHGTSPVVQCSCGITLKSKSVLYKHIHDHKNPNILSCDKCPKVSKTIAALNKHKMRHVPKSERKFCCSGCDKIFRTRDALKSHEKSHIPIQDRKIYHCEICNLKFTTRSSAASHKKVVHEKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCNKCSKPFKTYSNLKTHMDTHEDTAYECYICRRILNSRRTLRKHLLVHDDKCRHICSYCNKPFKRRQTLKVHMYTHTGDKPLTCKWCDERFAYASTLRSHRLRNHPDKMVHHNVSHNAYSSYVSSGEVTTLHSYYAFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -