Basic Information

Insect: Lobophora halterata
Gene Symbol: -
Assembly: GCA_932525835.1
Location: CAKOAV010000028.1:9039051-9043625[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.0001 22.7 1.3 1 23 267 289 267 289 0.96

2 9 4.7e-05 0.0027 18.2 0.1 1 23 295 317 295 317 0.97

3 9 1.4e-06 8.5e-05 22.9 1.1 1 23 323 345 323 345 0.98

4 9 1.8e-05 0.0011 19.5 4.4 1 23 351 373 351 373 0.98

5 9 0.0013 0.073 13.7 0.3 3 23 378 398 377 398 0.92

6 9 0.00039 0.023 15.3 2.6 2 23 417 438 416 438 0.97

7 9 8.9e-06 0.00052 20.5 0.4 1 23 444 466 444 466 0.98

8 9 1.3e-05 0.00078 19.9 0.9 1 23 472 494 472 494 0.98

9 9 8.3e-06 0.00049 20.6 2.8 1 23 500 523 500 523 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.0001	22.7	1.3	1	23	267	289	267	289	0.96
2	9	4.7e-05	0.0027	18.2	0.1	1	23	295	317	295	317	0.97
3	9	1.4e-06	8.5e-05	22.9	1.1	1	23	323	345	323	345	0.98
4	9	1.8e-05	0.0011	19.5	4.4	1	23	351	373	351	373	0.98
5	9	0.0013	0.073	13.7	0.3	3	23	378	398	377	398	0.92
6	9	0.00039	0.023	15.3	2.6	2	23	417	438	416	438	0.97
7	9	8.9e-06	0.00052	20.5	0.4	1	23	444	466	444	466	0.98
8	9	1.3e-05	0.00078	19.9	0.9	1	23	472	494	472	494	0.98
9	9	8.3e-06	0.00049	20.6	2.8	1	23	500	523	500	523	0.98

Sequence Information

Coding Sequence: ATGCATTTCATTTCAAGCATTACTTTGCTGGAAATATTTGAAAGAATCACTGATAGCAAGCTTAATACTGAAGATGGCAAACCAGGCTCAATTTGCTACATTTGTCATGCCCAATTACTGCGGAGATGCTACAGATTCTCTGCAATGTCTCGTAGAGCTGAAGAAATCATGACTGACCTTGTGCGAAATAGATTAGATATATCGCACAGAACTCTTTTGATGCTAAACTTGGTATTACGAAATAACCTGAATCGATCCGCTATGCAGAGCGTTTCTGTAGATGGATATTCTTCACAAAGGAGGAAGAATCAAGTTATTGTCAAGGAGGAACCGGCTGATAATTTTGAAAATGATACGAAAATTGCCATCAAAATTGAGGGCACATCACAAAACTACCAGTGCCCTATCATCTGTAGGGTGTGCTTAGTTTGCAATGTCAAAATGTACTGCATCAAAGAAATTGGACTCCAAGAATTATTTGAGAAAGTCACCAATATCAAGTTAAACACCGTAGATGGCAGGCCGACGACCATCTGCTACATCTGCCGGCCGCAGCTGCAGAGCTGCCGCGCATTCGGCTCCACCTACCGCAGGGCTGAACAGATCCTGGCTGATCTGTTCACCAATGGCTTTGAGGTATCACAGAAGTCACTAAACATTTTCAACCTAAAAATCATACAACACCTGTCAACAACCCCTACACAGTTCATGTGCTTTGAAGATTGTTCAAATGTAAGTACCGCGGTCGCTGTGAAAGAAGAATTCATTGAACAAGAGGAACAAATTGGGGAAAAACTACACGCCTGCGACACGTGTAACAAAGAGTTCGCCTCAAAAGCTAACCTAAAAAGGCACCAACTGATCCATAGCGAAGAAAGGCCATACGCTTGCAGCACTTGCGGCAAAGCCTTCTCTGACGGCAGCATACTGCAGAGACATCTCAAAATACACTCCGACCAAAAACCCTTCGCCTGCAACAAGTGCGATAAGAGGTTTATAGTAAAAACCAGTTTGATTAATCACCTCAGAACCCATACGGGACTGAAGCCATACGCCTGCAGTAACTGTGCGAGGACATTCACTGACCACAATCATTTGAACAGGCACATGAAAATCCACGAACAAAATACTTGTATCGTGTGCAGTATGACTTTCCCAAGGAAGGGACTTTTAGTGAAACATATGAAGTGGCATAAATTTCCACGAGCCTCGCAAATTGAGAACACGGGAAGTGATTGTACACTTGATTACTGCGATAAATGTCAGAAACTTTTCGCATCTCACAGGGCACTAATGCAACATATGAAAAGGCATTCTAGCCTAAAACCGTATGCGTGCCAAGTTTGCGATATGCGGTTTTCAGAAAGAAGATCTTTGGTGAGGCATATGATAACTCATACGGACGAAAGACCATTTCCGTGTGATGTATGTAACAAGAAATTACGCACGAAGTTTGCGCTGAAGAGACACTTGCAAATACATACCGGGGAAAAGCCATACACCTGTGACCATTGTGGTAAGAAATATGCCGATAAGACTCATTTGGGTACTCATATTATGAGAGTTCATTTGAACAAAGAAAATAAATTGGCTTCGAAGAAGAAACAGAACATTAAAATTGAGAAGAGATAA
Protein Sequence: MHFISSITLLEIFERITDSKLNTEDGKPGSICYICHAQLLRRCYRFSAMSRRAEEIMTDLVRNRLDISHRTLLMLNLVLRNNLNRSAMQSVSVDGYSSQRRKNQVIVKEEPADNFENDTKIAIKIEGTSQNYQCPIICRVCLVCNVKMYCIKEIGLQELFEKVTNIKLNTVDGRPTTICYICRPQLQSCRAFGSTYRRAEQILADLFTNGFEVSQKSLNIFNLKIIQHLSTTPTQFMCFEDCSNVSTAVAVKEEFIEQEEQIGEKLHACDTCNKEFASKANLKRHQLIHSEERPYACSTCGKAFSDGSILQRHLKIHSDQKPFACNKCDKRFIVKTSLINHLRTHTGLKPYACSNCARTFTDHNHLNRHMKIHEQNTCIVCSMTFPRKGLLVKHMKWHKFPRASQIENTGSDCTLDYCDKCQKLFASHRALMQHMKRHSSLKPYACQVCDMRFSERRSLVRHMITHTDERPFPCDVCNKKLRTKFALKRHLQIHTGEKPYTCDHCGKKYADKTHLGTHIMRVHLNKENKLASKKKQNIKIEKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -