Lhal015057.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- zfy1
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000037.1:175388-185688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0027 0.16 12.7 4.1 1 23 167 189 167 189 0.98 2 14 0.63 37 5.2 0.3 1 23 196 218 196 218 0.96 3 14 0.073 4.3 8.2 0.7 1 23 222 245 222 245 0.98 4 14 0.14 8 7.3 3.7 2 23 253 274 252 275 0.94 5 14 1.9e-07 1.1e-05 25.7 0.6 2 23 281 302 281 302 0.98 6 14 6.1e-05 0.0036 17.8 3.8 1 23 308 330 308 330 0.99 7 14 0.00065 0.038 14.6 1.8 1 21 336 356 336 361 0.93 8 14 0.0017 0.099 13.3 0.2 1 23 369 392 369 392 0.96 9 14 0.17 10 7.0 0.0 1 23 398 420 398 420 0.97 10 14 1e-06 6.1e-05 23.4 1.1 1 23 429 451 429 451 0.98 11 14 0.0038 0.22 12.2 0.1 1 23 457 480 457 480 0.94 12 14 0.018 1 10.1 0.2 2 23 492 514 492 514 0.93 13 14 0.018 1 10.1 0.2 2 23 526 548 526 548 0.93 14 14 0.018 1 10.1 0.2 2 23 560 582 560 582 0.93
Sequence Information
- Coding Sequence
- ATGATTCGGTCCGCTCCTGCTCTAATGCCATGCCCTATTTTAGGGTTCAATATGTTCTATGAATCTTCAAATAAAGAAGATGAACAAGATACGGAGGATTTGAACAACGAACCAGAAGTGAAGAGGAAGAAGAAGGTCAAACCACCGAAGTGCAAGAAGAAGAGCATTAAGAGAAGGGATACTACGTTGTTCCTGTGCAGTCAGAATTTTGGATTTCTACAAAATGGCAGAGAGACAGCGGCGCGAGTTCGGCGCCCGAGCCGAGGTTTTGTGAGCTGGCTCGAGCTAGGTGAGATGGTGGTCAAACGCAAGCCTATAAATAGTAAAAAAAAAATGTTGGTGGTCAGTGTGGAGGAAGCCGCTCCCCCGGCCAGCGGATGTCCGGTTCGTCGCAAGCCGCTCGAGCTGGATCCGGACAAGATCCGGGTCATCACGCTGGATCCGGAAGAACAAGTAAAACAGCGCGAGGAGGAGAGCCAGTCGCGGGTTCGGTTCCCGTTCCAGTGCGCGCTGTGTTTCAAAGGGTTCAACTTCGAGCACAAACTGCAGAACCACATGACCAAGCACAGCCCGTCTCGCGGTCAGTACGAATGCAAACTGTGCTCGATGTATCTCCCCACAGTGTACAGCTATAGCGTGCACACCCTCATCCACACGCGGCGCTATGAGTGCGCCAAGTGTGGACTGCGCATGATCGACCGCGCGTCCATACTGCACCACTACAGAACTCAGCACGAAGGCATAACCACTGTAATCACGTGTGATCTCTGTGGGAAGATATCCAGCAACAGTAAGACGCACCGCGGCCACATGCGGAACCACCACTCGGGGGAGCGGCCCAAGTGCGACCAGTGCGGGAAGAGCTTCATCAACAAGGACTCGCTCACCGAGCACATGCAGATCCACGAGGGAGTGAAGAACTACGAGTGCTCGGTGTGCGGCAAGCGGAGTCGAACCCGCACCCAGATGAAGCACCACCAGCTCACGCACACCGACCTCAAGCAGTATTACTGCGTCGAGTGTGACGTCAGATTTAAATCCGCCCACAGTTTGAGGCAACATCTCACCAAAAGCCTAAAACATAAAGATGTCGCCACACTCATGTTCCCGTGCGAGCGATGCGATAAGCGGTTCGAGACGGCAGCGGCTCGCTACACGCACGTGCGGGTGCAGCACGACGGCGTGCGCGCCTTCCCGTGCGGACAGTGCGGCGCCGCGCTGGCGAGCCGAGCGAGCCGAGACAAGCACGCGCGCAGGCACGCCGCCGCGCCGCCGCCCCCGCGCCACGTGTGCGACACCTGCGGCAAGGCCTTCCGGGGCAAGAGCGTGCTGACGAACCACATCCGCACGCACACGGGCGAGAAGCCATTCGTGTGCGCGCTGTGCGGCCGCGGCTTCAGCCAGCGCACCGCGCGCGCCACGCACGTCAAGCTGGTGCACCTCAAGCTGCGCAGGAACAAGGTAATGCCAGCTACGTGCGCACTGTGCGGCCGCGGCTTCAGCCAGCGCACCGCGCGCGCCACGCACGTCAAGCTGGTGCACCTCAAGCTGCGCAGGAACAAGGTAATGCCAGCTACGTGCGCACTGTGCGGCCGCGGCTTCAGCCAGCGCACCGCGCGCGCCACGCACGTCAAGCTGGTGCACCTCAAGCTGCGCAGGAACAAGGTAATGCCAGCTACGTGCGCACTGTGCGGCCGCGGCTTCAGCCAGCGCACCGCGCGCGCCACGCACGTCAAGCTGGTGCACCTCAAGCTGCGCAGGAACAAGGGTATAAAAGAGGAGTCTGCGGCACCCGCCGCCATCGCCGCCGTCGCGCCGCCCGCCAAGCCCGAGCTGTTCCCCAAAGACGAGCCTCAGATCGTGTACGACTCCTGGAGCCGCCCCTGCGACGTGTTCTACGTCACCGCCGGACCATAG
- Protein Sequence
- MIRSAPALMPCPILGFNMFYESSNKEDEQDTEDLNNEPEVKRKKKVKPPKCKKKSIKRRDTTLFLCSQNFGFLQNGRETAARVRRPSRGFVSWLELGEMVVKRKPINSKKKMLVVSVEEAAPPASGCPVRRKPLELDPDKIRVITLDPEEQVKQREEESQSRVRFPFQCALCFKGFNFEHKLQNHMTKHSPSRGQYECKLCSMYLPTVYSYSVHTLIHTRRYECAKCGLRMIDRASILHHYRTQHEGITTVITCDLCGKISSNSKTHRGHMRNHHSGERPKCDQCGKSFINKDSLTEHMQIHEGVKNYECSVCGKRSRTRTQMKHHQLTHTDLKQYYCVECDVRFKSAHSLRQHLTKSLKHKDVATLMFPCERCDKRFETAAARYTHVRVQHDGVRAFPCGQCGAALASRASRDKHARRHAAAPPPPRHVCDTCGKAFRGKSVLTNHIRTHTGEKPFVCALCGRGFSQRTARATHVKLVHLKLRRNKVMPATCALCGRGFSQRTARATHVKLVHLKLRRNKVMPATCALCGRGFSQRTARATHVKLVHLKLRRNKVMPATCALCGRGFSQRTARATHVKLVHLKLRRNKGIKEESAAPAAIAAVAPPAKPELFPKDEPQIVYDSWSRPCDVFYVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -