Basic Information

Insect: Lobophora halterata
Gene Symbol: -
Assembly: GCA_932525835.1
Location: CAKOAV010000047.1:451982-453586[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.16 9.5 7.1 0.0 2 23 11 33 10 33 0.96

2 15 0.082 4.8 8.0 0.3 2 23 54 76 53 76 0.92

3 15 0.00069 0.04 14.5 2.3 3 23 83 104 81 104 0.96

4 15 0.063 3.7 8.3 1.5 1 23 109 132 109 132 0.94

5 15 0.15 8.9 7.2 0.2 2 23 135 157 135 157 0.94

6 15 0.0025 0.15 12.7 0.9 2 22 164 184 163 184 0.93

7 15 0.0018 0.11 13.2 0.7 1 23 242 265 242 265 0.95

8 15 0.3 18 6.2 0.1 2 23 293 315 292 315 0.94

9 15 0.00082 0.048 14.3 0.2 3 23 339 360 337 360 0.96

10 15 0.00033 0.02 15.5 0.1 3 20 367 384 365 388 0.92

11 15 0.0036 0.21 12.3 0.7 1 23 393 416 393 416 0.98

12 15 0.00024 0.014 15.9 0.2 2 23 422 444 422 444 0.94

13 15 2.4e-05 0.0014 19.1 4.7 1 23 448 471 448 471 0.98

14 15 0.0003 0.017 15.7 1.2 2 23 478 499 477 499 0.96

15 15 0.0029 0.17 12.6 2.3 1 23 505 527 505 527 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.16	9.5	7.1	0.0	2	23	11	33	10	33	0.96
2	15	0.082	4.8	8.0	0.3	2	23	54	76	53	76	0.92
3	15	0.00069	0.04	14.5	2.3	3	23	83	104	81	104	0.96
4	15	0.063	3.7	8.3	1.5	1	23	109	132	109	132	0.94
5	15	0.15	8.9	7.2	0.2	2	23	135	157	135	157	0.94
6	15	0.0025	0.15	12.7	0.9	2	22	164	184	163	184	0.93
7	15	0.0018	0.11	13.2	0.7	1	23	242	265	242	265	0.95
8	15	0.3	18	6.2	0.1	2	23	293	315	292	315	0.94
9	15	0.00082	0.048	14.3	0.2	3	23	339	360	337	360	0.96
10	15	0.00033	0.02	15.5	0.1	3	20	367	384	365	388	0.92
11	15	0.0036	0.21	12.3	0.7	1	23	393	416	393	416	0.98
12	15	0.00024	0.014	15.9	0.2	2	23	422	444	422	444	0.94
13	15	2.4e-05	0.0014	19.1	4.7	1	23	448	471	448	471	0.98
14	15	0.0003	0.017	15.7	1.2	2	23	478	499	477	499	0.96
15	15	0.0029	0.17	12.6	2.3	1	23	505	527	505	527	0.97

Sequence Information

Coding Sequence: ATGGAGATCAAAGTCGACGTTTCGGAGGTCACATGTGAACTTTGCGGAACTATTCTAGCATCGTTCGATGAAGTGATAGATCATTTAAAAGTAAAACATAACATTGAGTACGATAAAGACGTAGAAATGGCAATCGAAGAGTACAAACTGGCCGATCTCAGTTGCTTAGCATGCGATGAAAAATTCACGTATTTCGGATATTTGGTATCGCATGTGAACAACAAGCATCCTAAAAACTGTCTACTCTGTGATAAATGTAACCAAAAGTTTAATAAAAAGAGAGATCTCTTTTCACACATAAAGAATTATCATAGAGAGGGGGGTTACCAGTGCGAGTTATGTCTGCAGACGTTCAACTCTTTGAATATATTGCGAAAACATAGAAGCAATCGCCATATGGCTCGATGTAACATTTGTCAGTTGAGGCTACCTTCCGCAGCACTGAAACAGAAGCATATGGAGTTGGAACACCCTGACGACGACTCCTTACAATGTGACAATTGTGAGAAAGAGTTCCACACAAAAACTGGACTCCGAATGCACGCGAGGAAGTGTAAAGTGAACTTGTATGAAATTGCCGTGAAAAAGGAAGACGAAACAATGGATTTAGATGAGTACTACGAGGATTTAGCTAAAAGACCGAGCGTGAAGCAAATTCGTGAGAACATTGTGATCGTCATTAACATGTCTACAGCTATACCGTTCAACTTCTACAAGAACAAGTTCAACTGCTTCTACTGCTCCAAAGACTTTCCCGATTCTGAATCGATGCGCGAACATACAGTCACCGAACATCCTATATGTGACATCAACGAGAACTGCATCAAGAAGTGCAGAGAAACAGTCACATGCGTGAAGATAGATATTGCTACACTGTCTTGCAAAATCTGTTTCGTATCCATGACTGATTTGGACACCCTTCTTGAGCACTTGATCGTGAACCACAGGGCTAACTACGACAGGTCCATCAGCGCTTGCTTACAGCCGTACAAACTGATCAAAGACCACATGGCTTGCCCAAACTGTCCCGTCGAGTTCCGTTTCTTCGGCACGCTGCTCAAACATATGAATAAAGAGCATACGAACAATAATATCATCTGTGTTTACTGCGGTGAAACTTTTCGCCGCGACCAAAATCTCAGAGTCCATATTTGGCGGCGCCACAGAGACGGCAGATTCAAGTGTAACATATGCGATACAGACTGCAATATACCCTCCAGGCTTTACATGCACATGGCGACGGCGCATGGGGTGCGTGCAGCGAAATGTCCAAAATGCCCTGAAACTTTTGCCACTCAGTATTTACGACAAAAGCATTTGATCGAAGCTCACAATTCCGGCCACAAATGCTCTTACTGCGGGAAGTTGTTTACTCGAAACTCGTTTAtgcgtgatcatatccggcgcacccatttgaaggagaagaatgtggagtgctgtgtgtgcggtgtgaagttcttcaacaatgtgctgctgaggcggcacatggtgaaacatagtggggagaaaaattttcactgcgacgtgtgtggggaaagatttttctggcgaaagagtttaaggactcatatgGCACGGCATAGCAAACATCAAACGCTCTTGTAA
Protein Sequence: MEIKVDVSEVTCELCGTILASFDEVIDHLKVKHNIEYDKDVEMAIEEYKLADLSCLACDEKFTYFGYLVSHVNNKHPKNCLLCDKCNQKFNKKRDLFSHIKNYHREGGYQCELCLQTFNSLNILRKHRSNRHMARCNICQLRLPSAALKQKHMELEHPDDDSLQCDNCEKEFHTKTGLRMHARKCKVNLYEIAVKKEDETMDLDEYYEDLAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSESMREHTVTEHPICDINENCIKKCRETVTCVKIDIATLSCKICFVSMTDLDTLLEHLIVNHRANYDRSISACLQPYKLIKDHMACPNCPVEFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRRHRDGRFKCNICDTDCNIPSRLYMHMATAHGVRAAKCPKCPETFATQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECCVCGVKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHSKHQTLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856923;
90% Identity: -
80% Identity: -